SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15859

Length: 2109 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15859
CGTGGTGAGCTTGCTGCATCATTGCGTGATCTCGGCGCCACTGGTTTTGGGTGAGACATCTTGGTTTCCAGAGCCCGGCGGTGGACATACGAATTTTCGTGACTGCACATCTTCCTCCCATGATTCGCCGGAATATACTCTCATTGCTCCGCTCCTACTGAACATAAAGGGAGGTGGAGGAGGAGGTGGTGGCAACACTACGATTGATCCGTTGAGAGGATTTATATGATAATTCTTCGTTATTCAACATACCGTTAACAGGAAGCATAAGTGCGTAACAGTTTCGTCTTCTACGCACGCTCTGATCTGTCCGCGACGGGGATCTTTCTATCACGACCGAAAATGGCTGCAGCACCAGCAGTTGCTTCACCCGCAGTCGAAACCGATCGGATCTTTAAACTTCAAGCCGAGGTCACGAAGCTGAACCAGATCAGTGATAATGAGAAGGAAGGGTTTGTGCGACTGGTTTCTCGCTACCTCAGCGGCGAAGAAGAGAAGATTGAATGGGAAAAAATCAAGACCCCGACTGACGAGGTCGTGGTTCCCTACGATACGTTGGCAGCTTTGGGAGAAGATCCATCGGAAACCAAGGAACTCTTGGACAAGCTTGTTGTGTTAAAGCTTAATGGCGGTTTGGGGACAACCATGGGTTGTACTGGGCCCAAATCCGTCATTGAAGTACGAAATGGCCTAACATTTCTGGACTTGATTGTGAAGCAAATAGAGTCTCTGAACAACAAATACGATTCCAAAGTTCCGTTGGTGCTGATGAATTCATTTAATACACATGATGATACAATTAAGATTGTAGAAAAGTACTCTGGCTCAAATATTGACATCCACATCTTCAACCAGAGTCAATATCCACGCATGGTGGCAGAAGATTTGACACCATGGCCAACTAAAGGTCGTACAGACAAAGAAGCATGGTACCCACCTGGCCACGGAGATGTTTTCCCTGCTCTTTTGAACAGTGGGAAGCTTGATGAACTACTCTCACAGGGTAAGGAGTATGTGTTTATAGCTAACTCAGACAACTTGGGAGCAATAGTTGATCTCAAAATTTTGAATCATCTGGTCAAAAATAAAAATGAATACTGCATGGAGGTCACTCCCAAAACGCTTGCAGATGTAAAAGGTGGTACGCTTATCTCTTATGAAGGCAGAGTTCAGCTTCTAGAGATTGCACAGGTTCCAGAGGAGCATGTTGGCGAGTTCAAGTCGATTGAAAAGTTCAAAATATTCAATACCAATAATTTATGGGTGAACTTGAAGGCGATTAAGAGGCTCGTGGAGGCTGATGCTCTTAAAATGGAGATAATTCCAAATCCAAAGGAAGTAGATGGGGTAAAGGTGCTTCAGCTTGAAACGGCTGCAGGTGCTGCTATAAGGTTTTTTGATCGTGCAATTGGTGTCAATGTTCCAAGATCACGCTTTCTCCCAGTGAAGGCAACTTCAGATTTACTACTTGTGCAGTCAGATCTTTACACTGTGGAGGAAGGTTTTGTCATCCGAAATCCTGCTAGAGTCAACCCTGCAAATCCCTCCATTGAGTTGGGTCCTGAATTCAAGAAGGTTGGCAACTTTCTAAAGCGTTTCAAGTCCATACCTAGCATCATTGATCTTGATAGTCTAAAGGTGTCAGGTGATGTGTGGTTTGGCAGTGGAGTCATCCTGAAGGGAAAAGTTATAATTGAAGCAAAGCAGGGGGCTACACTTGAGATACCTGATGAATCTGTGATAGAAAACAAGGTAGTGAGCAGTTCTGATGATATTGTGAGCTAGCTGATAAGTTTTGGCAGTTGGCATTCTTGATTTTTGGGTTGTTTGTAGAGCTAGAATATTTTGAACTCAGTCAGGGACTGTGTTTAGTGCCCTTAAAGAGTAGAGTGGAAGTTTCACCTCGGGTTTTATCTTCCATAATCGTTACTGGGAGGGGTTTCATAATTTTACTATAACCAGCCAGTTTCTATGTAAATGTTGAGCGTGAATTTTTATGCATGAAAGCCTAGGATGCAATAAATGGTGCTTTGTTGAGATTTTTTGTTGTTTGTAAGTTTTGGAATTGACACACGGTAATGAAAGCTTTTGCCAAAGCCATATCCAAAC

Ace file of the UniGene sp_v1.1_unigene15859

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucose pyrophosphorylase n=3 Tax=Pinaceae RepID=A6N839_PINTA	-	-	91%
FL-Next	tr=UDP-glucose pyrophosphorylase; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	udp-glucose pyrophosphorylase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	UTP--glucose-1-phosphate uridylyltransferase.	EC:2.7.7.9	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	91%
Blast2go	Galactose metabolism	00052	91%
Blast2go	Starch and sucrose metabolism	00500	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	91%
Blast2go	Metabolic pathways	01100	91%
Blast2go	Biosynthesis of secondary metabolites	01110	91%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	91%
Blast2go	metabolic process	GO:0008152	Biological Process	91%
Blast2go	response to salt stress	GO:0009651	Biological Process	91%
Blast2go	UTP:glucose-1-phosphate uridylyltransferase activity	GO:0003983	Molecular Function	91%
Blast2go	cytoplasm	GO:0005737	Cellular Component	91%
Blast2go	plasma membrane	GO:0005886	Cellular Component	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UTP--glucose-1-phosphate uridylyltransferase	IPR002618	-	0.0	91%
Blast2go	UTP--glucose-1-phosphate uridylyltransferase, subgroup	IPR016267	-	0.0	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A6N839

Fln msg:

Fln protein: MAAAPAVASPAVETDRIFKLQAEVTKLNQISDNEKEGFVRLVSRYLSGEEEKIEWEKIKTPTDEVVVPYDTLAALGEDPSETKELLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVKQIESLNNKYDSKVPLVLMNSFNTHDDTIKIVEKYSGSNIDIHIFNQSQYPRMVAEDLTPWPTKGRTDKEAWYPPGHGDVFPALLNSGKLDELLSQGKEYVFIANSDNLGAIVDLKILNHLVKNKNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPEEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDRAIGVNVPRSRFLPVKATSDLLLVQSDLYTVEEGFVIRNPARVNPANPSIELGPEFKKVGNFLKRFKSIPSIIDLDSLKVSGDVWFGSGVILKGKVIIEAKQGATLEIPDESVIENKVVSSSDDIVS*

Protein Length: 482

Fln nts: CGTGGTGAGCTTGCTGCATCATTGCGTGATCTCGGCGCCACTGGTTTTGGGTGAGACATCTTGGTTTCCAGAGCCCGGCGGTGGACATACGAATTTTCGTGACTGCACATCTTCCTCCCATGATTCGCCGGAATATACTCTCATTGCTCCGCTCCTACTGAACATAAAGGGAGGTGGAGGAGGAGGTGGTGGCAACACTACGATTGATCCGTTGAGAGGATTTATATGATAATTCTTCGTTATTCAACATACCGTTAACAGGAAGCATAAGTGCGTAACAGTTTCGTCTTCTACGCACGCTCTGATCTGTCCGCGACGGGGATCTTTCTATCACGACCGAAA_-_ATGGCTGCAGCACCAGCAGTTGCTTCACCCGCAGTCGAAACCGATCGGATCTTTAAACTTCAAGCCGAGGTCACGAAGCTGAACCAGATCAGTGATAATGAGAAGGAAGGGTTTGTGCGACTGGTTTCTCGCTACCTCAGCGGCGAAGAAGAGAAGATTGAATGGGAAAAAATCAAGACCCCGACTGACGAGGTCGTGGTTCCCTACGATACGTTGGCAGCTTTGGGAGAAGATCCATCGGAAACCAAGGAACTCTTGGACAAGCTTGTTGTGTTAAAGCTTAATGGCGGTTTGGGGACAACCATGGGTTGTACTGGGCCCAAATCCGTCATTGAAGTACGAAATGGCCTAACATTTCTGGACTTGATTGTGAAGCAAATAGAGTCTCTGAACAACAAATACGATTCCAAAGTTCCGTTGGTGCTGATGAATTCATTTAATACACATGATGATACAATTAAGATTGTAGAAAAGTACTCTGGCTCAAATATTGACATCCACATCTTCAACCAGAGTCAATATCCACGCATGGTGGCAGAAGATTTGACACCATGGCCAACTAAAGGTCGTACAGACAAAGAAGCATGGTACCCACCTGGCCACGGAGATGTTTTCCCTGCTCTTTTGAACAGTGGGAAGCTTGATGAACTACTCTCACAGGGTAAGGAGTATGTGTTTATAGCTAACTCAGACAACTTGGGAGCAATAGTTGATCTCAAAATTTTGAATCATCTGGTCAAAAATAAAAATGAATACTGCATGGAGGTCACTCCCAAAACGCTTGCAGATGTAAAAGGTGGTACGCTTATCTCTTATGAAGGCAGAGTTCAGCTTCTAGAGATTGCACAGGTTCCAGAGGAGCATGTTGGCGAGTTCAAGTCGATTGAAAAGTTCAAAATATTCAATACCAATAATTTATGGGTGAACTTGAAGGCGATTAAGAGGCTCGTGGAGGCTGATGCTCTTAAAATGGAGATAATTCCAAATCCAAAGGAAGTAGATGGGGTAAAGGTGCTTCAGCTTGAAACGGCTGCAGGTGCTGCTATAAGGTTTTTTGATCGTGCAATTGGTGTCAATGTTCCAAGATCACGCTTTCTCCCAGTGAAGGCAACTTCAGATTTACTACTTGTGCAGTCAGATCTTTACACTGTGGAGGAAGGTTTTGTCATCCGAAATCCTGCTAGAGTCAACCCTGCAAATCCCTCCATTGAGTTGGGTCCTGAATTCAAGAAGGTTGGCAACTTTCTAAAGCGTTTCAAGTCCATACCTAGCATCATTGATCTTGATAGTCTAAAGGTGTCAGGTGATGTGTGGTTTGGCAGTGGAGTCATCCTGAAGGGAAAAGTTATAATTGAAGCAAAGCAGGGGGCTACACTTGAGATACCTGATGAATCTGTGATAGAAAACAAGGTAGTGAGCAGTTCTGATGATATTGTGAGCTAG___CTGATAAGTTTTGGCAGTTGGCATTCTTGATTTTTGGGTTGTTTGTAGAGCTAGAATATTTTGAACTCAGTCAGGGACTGTGTTTAGTGCCCTTAAAGAGTAGAGTGGAAGTTTCACCTCGGGTTTTATCTTCCATAATCGTTACTGGGAGGGGTTTCATAATTTTACTATAACCAGCCAGTTTCTATGTAAATGTTGAGCGTGAATTTTTATGCATGAAAGCCTAGGATGCAATAAATGGTGCTTTGTTGAGATTTTTTGTTGTTTGTAAGTTTTGGAATTGACACACGGTAATGAAAGCTTTTGCCAAAGCCATATCCAAAC

Fln Alignment:

sp_v1.1_unigene15859___ETDRIFKLQAEVTKLNQISDNEKEGFVRLVSRYLSGXXXXXXXXXXXTPTDEVVVPYDTLAALGEDPSXXXXXXXXXXXXXXXXXXXXXMGCTGPKSVIEVRNGLTFLDLIVKQIESLNNKYDSKVPLVLMNSFNTHDDTIKIVEKYSGSNIDIHIFNQSQYPRMVAEDLTPWPTKGRTDKEAWYPPGHGDVFPALLNSGKLDELLSQGKEYVFIANSDNLGAIVDLKILNHLVKNKNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPEEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDRAIGVNVPRSRFLPVKATSDLLLVQSDLYTVEEGFVIRNPARVNPANPSIELGPEFKKVGNFLKRFKSIPSIIDLDSLKVSGDVWFGSGVILKGKVIIEAKQGATLEIPDESVIENK
A6N839_______________ETDRIPKLQAEVTKLNQISDNEKEGFVRLVSRYLSGEEEKIEWEKIKTPTDEIVVPYDTLAALGEDPSETKELLDKLVVLKLNGGLGTTMGCTGPKSVIEVRNGLTFLDLIVKQIESLNNKYDSKVPLVLMNSFNTHDDTIKIVEKYSGSNIDIHIFNQSQYPRMVAEDLTPWPTKGRTDKEAWYPPGHGDVFPALLNSGKLDELLSQGKEYVFIANSDNLGAIVDLKILNHLVKNKNEYCMEVTPKTLADVKGGTLISYEGRVQLLEIAQVPEEHVGEFKSIEKFKIFNTNNLWVNLKAIKRLVEADALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDRAIGVNVPRSRFLPVKATSDLLLVQSDLYTVEEGFVIRNPARVNPTNPTIELGPEFKKVGNFLKRFKSIPSIIDLDSLKVSGDVWFGSGVILKGKVIIEAKQGATLEVPDESVIENK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
248			88	11	0.923564
324	88		11		0.923564
812			88	11	0.923564
817		11		88	0.923564
819			87	12	0.992554
820	75	12			0.975346
821	87	12			0.992554
823	87	12			0.992554
825		12		87	0.992554
2044	14		78		0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain