SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15855

Length: 1279 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15855

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Emp24 protein (Fragment) n=1 Tax=Hyacinthus orientalis RepID=Q677D6_HYAOR	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	transmembrane emp24 domain-containing protein 10	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	integral to membrane	GO:0016021	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GOLD	IPR009038	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Z0

Fln msg:

Fln protein: MAQRGWVMILHLTLMCSWAVSCVRGIRFDVAASAKCISEEIQTNVLVLGDFSVVNHDHDHGHQPHNVSVKVTSPYGNLLYSTEDVSLGQFTFTTHESGIYVACLWIPNASHGAVTTVDLDWKVGIAAKDWATIARKEKIEGVELELRKLEAAVEAIHENLMYLRSREAEMREVSEVTNGRVAWFSIMSLTVCLVVSAGQLWHLKRYFEKKKLI*

Protein Length: 215

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTGACACACGAGTGTTTCGATCACTTGTTCGCACTGCTTACCATCTCTGTATTGTAATAGAGCACATAGATTGATTTCAGAGGTTTTCTGAA_-_ATGGCTCAGAGAGGATGGGTGATGATATTACATTTGACGCTAATGTGTTCATGGGCAGTTTCATGTGTGCGCGGCATCCGATTCGATGTGGCTGCAAGTGCCAAGTGCATCTCTGAGGAAATCCAGACCAACGTCCTCGTGCTTGGTGATTTCTCGGTGGTGAACCACGATCATGATCATGGACATCAGCCTCACAATGTCTCTGTTAAGGTGACATCACCTTATGGAAATTTGTTATACTCCACAGAAGATGTTTCATTGGGTCAATTTACATTCACAACACATGAATCTGGCATCTATGTAGCATGTTTATGGATTCCAAATGCTTCTCATGGAGCAGTTACCACTGTTGATCTTGACTGGAAGGTTGGAATTGCAGCTAAAGACTGGGCAACAATTGCAAGGAAGGAGAAAATCGAAGGCGTTGAGCTTGAGTTGAGAAAACTCGAAGCAGCAGTCGAAGCAATTCATGAGAATTTAATGTACTTGAGAAGCAGGGAGGCAGAGATGCGAGAAGTCAGCGAGGTAACCAATGGCAGAGTGGCATGGTTCAGCATCATGTCACTTACTGTTTGCTTAGTAGTGTCGGCTGGGCAACTATGGCACTTAAAGCGATACTTTGAAAAGAAGAAACTAATCTAA___GCAGTTATGACACGTCTTTAACTTAACTGAGTTTGAGGGTACTGGACTGGGATGGATTTCTGAAGATTTAGAGAATGAGATTTTTTCTCCTTGGGTAATTATCATCCCCAACGTTGTTCGCTATAGATTTCTGTTTTGCTAATTCTAATTTCTAGTTGGGGCAAAGTGACTTATCTATCAAAATTTCTGTACTGTATTATTATTATTATCATATACTACATGACCTTTGCCTGAATTGGCTTCAATTGTAGGGTGCATCTTCTGAACTCTGTTTTCTCTAAAGTGAACATACTTTTTTGAAATAATGTGCCAAACATGCAAAGATGATTCTAACCTCTGTTGTTTTGTTTCTACAAGTCTTGTAGCAGCTCTCGCTATTTCATAACAAATATCTCCTTTGGCACTCGATACAAAATAATAACTGTTTATCTACAAAAAGTCTCATTCAGTATTTTGCATTAATTGGAATACTAGGAATGGCATGAACCATTGACCATTCACCCTGCTTTGAGGGTAC

Fln Alignment:

sp_v1.1_unigene15855___MAQRGWVMILHLTLMCSWAVSCVRGIRFDVAASAKCISEEIQTNVLVLGDFSVVNHDHDHGHQPHNVSVKVTSPYGNLLYSTEDVSLGQFTFTTHESGIYVACLWIPNASHGAVTTVDLDWKVGIAAKDWATIARKEKIEGVELELRKLEAAVEAIHENLMYLRSREAEMREVSEVTNGRVAWFSIMSLTVCLVVSAGQLWHLKRYFEKKKLI
D5A8Z0_______________MAQRGWERMLRLMLICSWAVSCVRGIRFDVVANAKCISEDIQTNVLVLADFSVVNHNHDHGQQPHNISVKVTSPYGNSLYSTENVSSGQFTFTTHESGIYVACLWIPNASQGAVTTVDLDWKVGIAAKDWQTIARKDKIEGVELELRKLEGAVEAIHENLMYLRSREAEMREVSEVTNGRVAWFSTMALTVCLVVSAGQLWHLKRYFEKKKLI

SNPs (tot: 6)

Position	C %	G %	T %	Probability
354	19		80	1.0
381		26	73	1.0
382	26		73	1.0
539	72		27	1.0
970	6		93	0.999364
1095		25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
957	971	TAT TAT TAT TAT TAT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain