SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15850

Length: 1855 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15850 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9SF09_RICCO	-	-	9.0e-28	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	glycine-rich protein	-	-	2.8026e-45	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein import into peroxisome matrix	GO:0016558	Biological Process	2.8026e-45	77%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	2.8026e-45	77%
Blast2go	protein binding	GO:0005515	Molecular Function	2.8026e-45	77%
Blast2go	peroxisomal membrane	GO:0005778	Cellular Component	2.8026e-45	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0K6

Fln msg:

Fln protein: MAASGSVPPPKPWERVGSSSGPSPFRPSSNGSTSTVVESSGVAKTGESTDTERNVPLANRSTIGRPMPTRPWEQGSYGSNYGGLGSMTNYNSGYGSMTNYNSGYGSGLYGSNSYGGMGGGYGAMSGSYGGGLYGNNMYRGGYGGSNMFGGMYNNGMGGPMGGYGMGPGGPYDNGNGNPNDPFGGPPSPPSFWQSMLRVMHGVVTFFGRISILVDQNTQAFHFFMTALLQLFDRTGVLYGELARFVLRLLGIRTKPRGPSRPGPKAIAGQGPPENYYIEEPKEAAGGWENVWEG*

Protein Length: 295

Fln nts: ATGGGAAATTCTCGCGAACAATGAATTAAAAATACCCTAAAAGCTTTGGAATTAGATATTTCCACCCAACACTATATACAGGTAATAGCTAAGGTATGAAATGGGATGGAAGGGTCCGAGAGACCGGTCGCGCCTGATCTCGGGGTGGGTTTGGATTGTACGCATGCCGGCGAGCCTGTGGATGGGCGAATCGTGCCATACACTCCCTCCGTTTCCATTTCTTCTTTCAGATTTTTCTTCCTCTCGTGTTATGTAATTGCGACTCAATAAAATTGGACTGAAACTCTGAAATTCAAGGGCCCGCAGGGGATCTGGCCAATTAATTGCGGTTTGTAACGCCGAAACCATATATATTTTGTCCCATCGAGTTTCTTTCGAAAGGCAGTTAGAGGCCC_-_ATGGCCGCCTCTGGTAGTGTTCCTCCACCTAAACCTTGGGAACGTGTTGGAAGCTCATCTGGGCCTTCTCCATTTAGGCCTTCTTCAAATGGATCCACAAGTACTGTGGTGGAGTCATCTGGAGTAGCAAAAACAGGAGAGAGTACTGATACTGAAAGAAACGTGCCTCTTGCTAACAGAAGCACTATTGGTAGACCTATGCCAACAAGACCTTGGGAGCAGGGTAGCTATGGAAGCAACTATGGAGGCTTAGGTTCTATGACAAACTATAATTCAGGCTATGGTTCCATGACAAATTACAATTCAGGCTATGGTTCTGGCCTTTATGGGTCCAACTCATATGGAGGAATGGGAGGAGGATATGGGGCGATGTCAGGATCGTATGGTGGTGGTCTTTATGGCAACAATATGTACAGAGGAGGATATGGTGGATCAAACATGTTTGGTGGAATGTATAATAACGGGATGGGAGGACCAATGGGTGGATATGGCATGGGCCCTGGAGGTCCTTATGACAATGGAAATGGTAATCCAAATGATCCATTTGGCGGACCTCCTTCACCCCCAAGCTTTTGGCAGTCTATGCTTCGTGTGATGCATGGTGTGGTGACATTTTTTGGTCGAATTTCTATCCTTGTTGATCAGAACACTCAGGCATTCCATTTTTTTATGACTGCCCTTCTCCAGCTGTTCGACCGAACTGGTGTATTGTACGGGGAGCTTGCTCGTTTTGTGCTGAGGTTACTTGGCATTCGGACAAAACCAAGGGGCCCATCCAGGCCTGGACCTAAAGCAATAGCTGGCCAAGGCCCCCCTGAAAACTACTACATTGAAGAACCTAAAGAGGCAGCTGGTGGCTGGGAAAATGTTTGGGAAGGTTAA___GGTGGCAGGATGCAGTAATCAGTTGCAGGTTCTCCTCCATGCAGATTTACAAGTATCCTCTCTCAACAAAATGAGATCTGCATTTTCTTGCCTTTTCAGTGGCTTTCATGCTTCTTGCATGAGTGAGTTCTAGACTGCATTGTGCAAGGTGTTGTAATTAAGTAGTACTAGTAACTGAATTTGGGCGACTGCACATTATGCAAATGTGGTGTGTAGTAGAGTCAGTTTTCAAGTGAAAGCGTTTTATTATGGCATCTTGCATTATAAGTGCACTATATTCTTTAAATGATAAGTAATTGGACTGTAGCTTATGAAGCTTAGATGTAGACAAGTAGGAGAAATTCGGCTGATTTGTTCAGGTGATAAGTGATTAGTGCAATTTTCATCCTGCTGATATTGCAAGTACAAATTCTTCCTTGAGACTTGGATTACAAGGTTCTCCCATTGTCAGGGGTATGTATTGTGATTGTTCCATTTGGTAAAAGAAATGCTTTTCCTCCTTTGTCCTTTTTACATATTAATAATATCGTTCTGGTCGAATGTTTCTAGATATGTAACCGTATTTGCAAAATAGAGGT

Fln Alignment:

sp_v1.1_unigene15850___MAASGSVPPPKPWERVXXXXXXXXXXXXXXXXXXXXXXXXXVAKTGESTDTERNVPLANRSTIGRPMPTRPWEQXXXXXXXXXXXSMTNYNSGYGSMT
A9P0K6_______________MAASGSVPPPKPWERVGSSSGPSPFRPPSTGSTSNVVESSGVAKIGESSDTERNVPLANRSTIGRPMPARPWEQGSYGGNYGGYGSMTNYNSGYGSTT

SNPs (tot: 7)

Position	A %	C %	T %	Probability
1293	86		13	1.0
1328		5	83	0.999887
1716	50	50		1.0
1726		70	30	1.0
1751		33	66	0.997452
1752		33	66	0.997452
1753		33	66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain