SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15841

Length: 2110 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15841
ATGGGGGATCGATTGGGTAATAGTTATTTTGATTTCCCCGCAACAAAAGCTATTCCCATGCTATATAACGTCGTCACCTTGACTGTCACAAATGAGGGCGAGCACAGGGTATGAACTCATTCATTCTATAGCTTCAATCGGGTAGTGAACAGGGTTTGAACTCATCAGTCTATCTGCATTCAATCGGCCGCCCATTGAACAGGGTTTGAACTCCTCAGTCTATCTGCATTCAATCTCGTGAGAAATTTCTTTCGCTTAGTTAGGGTTTTGCTTCGTGAATAGCGATGGTCTCTCAATCGTCATAGTTCAATTTCTATTTCTATTTGTGGCATCTACGGTCTGTCTATGCGCTGGGATCCCTCGACCTCGATACATTCACAGTACATATAAAATTTAGGTTTGGACTGAAACCCTATATTGACTAGAGTGAAACAATCTTGTGGTCTCACACTACGCGGATCCCTCAGTACTAGTTTAGAACCCTAGAGGTTTCTAGAGGCGAAACCAATTTCCATTCGATTGGAAACCCAACGCCAGCAACAACCTGCACCAAGGAAATAACTAGAGAAAGCAAGGAACGAACTGGGAGAAGATGATAGATACGGTGAATTGCCCAGATTGCAATAAGCAGACGGAAGTGGTATTCGATCACTCTGCGGGGGACACAGTGTGTGTGGAGTGCGGATTGGTGTTGGAGGCGCATTCAATAGATGAGACGTCGGAGTGGAGGACCTTCGCAAACGAGACGGGAGACAATGATCCCGTCCGTGTCGGCGGTCCATCAAATCCTCTTCTAACCGATGGCGGCCTCTCTACAGTCATATCGAAGCCCAACGGAGCGTCGGGGGACTTTCTCTCATCATCTCTGGGGCGCTGGCAGAATCGCGGCTCCAATCCCGACCGCTCGCTCATCATGGCCTTCAAGACAATTGGCACCATGTCGGATCGATTGGGTCTGGTTGCAACCATCAAGGACCGGGCAAATGAAATTTATAAGAAGGTTGAAGATTCAAAATCAATTAGGGGCAGAAATCAAGATGCAATCTTGGCTGCTTGCCTCTATATTGCATGCAGACAAGAGGATAAACCTCGTACAGTGAAAGAGATTTGCTCAGTTGCAAATGGTGCTTCGAAAAAGGAAGTTGGTCGAGCAAAGGAGTTCATTGTGAAACAGCTAGAAGAGGAAATGGGCAAATCAATGGAAATGGGAACCATCCATGCAGGGGATTTCCTGAGGCGTTTTTGTTCACATCTTGGTATGGGCCACCAGGCAGTTAAAGCAGCCACTGAAGCTGTCAAGAAATCAGAGGAGCTTGACATAAGGAGGAGCCCTATATCGATTGCAGCAGCGGCAATCTACATGATATCACAGCTTTCAGAGGAAAAGAAGCTTCTCAGAGATATTTCGCGAGCTACAGGAGTGGCAGAGGGTACAATCAGGAACTCCTATAAGGATTTGCATCCTCATGCAGCAAGGCTGATACCTGATTGGTTTGCAAAGGAAGAAGATTTGAAAAATTTATGCGCCCCTTAATGATCTAAAATATGATAAATGACAAATTCGACAATTAAGTGGCCATTACTTACGTGTAGTGCCAGTGGGGGTTATGGTGCAGTAGGAAAAGGATGGTCACTCTTTATTAGAATTTGGACATGATTGGAGTGCATGGTTGCCCGTTTGTATCAGAGATGGCAGTTAATAATATATCAAACTGCATTTGCAGTTTGCACTTTTGTTGTATAATACTTGCAAAAATTCTGGAAATTCTTAAACCCTGGGATGCATTCGTATAGATGGGGGTTTTCTCAAGTTTGTGAAGGCACAATGAGCCAAAAGTTAAATGTGTACATGTGAATTGAATGCCTGAACAGTCAGAAAATTATTAGCATGCCCTCCTGGATAAAACTGGCATGTAGTAGTTGTTATGGAACTCCAATTTTCCGTGCAAGTATGCCGACTGTCTGTTGATGAGTTGAATAGATGATGTCATCCTGGCTTCTGACGGTGAATATTTTTTGTATATGATTTTGTGCTCCATAATTTAGGGAGCTGGCATTTGTTTTTCACAAAAGCAAAATAACCCTTTAGAAAGGCATCGGGGTTTTTAAG

Ace file of the UniGene sp_v1.1_unigene15841

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription initiation factor iib, putative n=1 Tax=Ricinus communis RepID=B9RIF2_RICCO	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	transcription initiation factor iib	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	translational initiation	GO:0006413	Biological Process	92%
Blast2go	transcription initiation, DNA-dependent	GO:0006352	Biological Process	92%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	92%
Blast2go	translation initiation factor activity	GO:0003743	Molecular Function	92%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	92%
Blast2go	protein binding	GO:0005515	Molecular Function	92%
Blast2go	RNA polymerase II transcription factor activity	GO:0003702	Molecular Function	92%
Blast2go	cytoplasm	GO:0005737	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Transcription factor TFIIB	IPR000812	-	92%
Blast2go	Zinc finger, TFIIB-type	IPR013137	-	92%
Blast2go	Transcription factor TFIIB, cyclin-related	IPR013150	-	92%
Blast2go	Cyclin-like	IPR013763	-	92%
Blast2go	Transcription factor TFIIB, conserved site	IPR023486	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMH3

Fln msg:

Fln protein: MIDTVNCPDCNKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDIRRSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLHPHAARLIPDWFAKEEDLKNLCAP*

Protein Length: 315

Fln nts: ATGGGGGATCGATTGGGTAATAGTTATTTTGATTTCCCCGCAACAAAAGCTATTCCCATGCTATATAACGTCGTCACCTTGACTGTCACAAATGAGGGCGAGCACAGGGTATGAACTCATTCATTCTATAGCTTCAATCGGGTAGTGAACAGGGTTTGAACTCATCAGTCTATCTGCATTCAATCGGCCGCCCATTGAACAGGGTTTGAACTCCTCAGTCTATCTGCATTCAATCTCGTGAGAAATTTCTTTCGCTTAGTTAGGGTTTTGCTTCGTGAATAGCGATGGTCTCTCAATCGTCATAGTTCAATTTCTATTTCTATTTGTGGCATCTACGGTCTGTCTATGCGCTGGGATCCCTCGACCTCGATACATTCACAGTACATATAAAATTTAGGTTTGGACTGAAACCCTATATTGACTAGAGTGAAACAATCTTGTGGTCTCACACTACGCGGATCCCTCAGTACTAGTTTAGAACCCTAGAGGTTTCTAGAGGCGAAACCAATTTCCATTCGATTGGAAACCCAACGCCAGCAACAACCTGCACCAAGGAAATAACTAGAGAAAGCAAGGAACGAACTGGGAGAAG_-_ATGATAGATACGGTGAATTGCCCAGATTGCAATAAGCAGACGGAAGTGGTATTCGATCACTCTGCGGGGGACACAGTGTGTGTGGAGTGCGGATTGGTGTTGGAGGCGCATTCAATAGATGAGACGTCGGAGTGGAGGACCTTCGCAAACGAGACGGGAGACAATGATCCCGTCCGTGTCGGCGGTCCATCAAATCCTCTTCTAACCGATGGCGGCCTCTCTACAGTCATATCGAAGCCCAACGGAGCGTCGGGGGACTTTCTCTCATCATCTCTGGGGCGCTGGCAGAATCGCGGCTCCAATCCCGACCGCTCGCTCATCATGGCCTTCAAGACAATTGGCACCATGTCGGATCGATTGGGTCTGGTTGCAACCATCAAGGACCGGGCAAATGAAATTTATAAGAAGGTTGAAGATTCAAAATCAATTAGGGGCAGAAATCAAGATGCAATCTTGGCTGCTTGCCTCTATATTGCATGCAGACAAGAGGATAAACCTCGTACAGTGAAAGAGATTTGCTCAGTTGCAAATGGTGCTTCGAAAAAGGAAGTTGGTCGAGCAAAGGAGTTCATTGTGAAACAGCTAGAAGAGGAAATGGGCAAATCAATGGAAATGGGAACCATCCATGCAGGGGATTTCCTGAGGCGTTTTTGTTCACATCTTGGTATGGGCCACCAGGCAGTTAAAGCAGCCACTGAAGCTGTCAAGAAATCAGAGGAGCTTGACATAAGGAGGAGCCCTATATCGATTGCAGCAGCGGCAATCTACATGATATCACAGCTTTCAGAGGAAAAGAAGCTTCTCAGAGATATTTCGCGAGCTACAGGAGTGGCAGAGGGTACAATCAGGAACTCCTATAAGGATTTGCATCCTCATGCAGCAAGGCTGATACCTGATTGGTTTGCAAAGGAAGAAGATTTGAAAAATTTATGCGCCCCTTAA___TGATCTAAAATATGATAAATGACAAATTCGACAATTAAGTGGCCATTACTTACGTGTAGTGCCAGTGGGGGTTATGGTGCAGTAGGAAAAGGATGGTCACTCTTTATTAGAATTTGGACATGATTGGAGTGCATGGTTGCCCGTTTGTATCAGAGATGGCAGTTAATAATATATCAAACTGCATTTGCAGTTTGCACTTTTGTTGTATAATACTTGCAAAAATTCTGGAAATTCTTAAACCCTGGGATGCATTCGTATAGATGGGGGTTTTCTCAAGTTTGTGAAGGCACAATGAGCCAAAAGTTAAATGTGTACATGTGAATTGAATGCCTGAACAGTCAGAAAATTATTAGCATGCCCTCCTGGATAAAACTGGCATGTAGTAGTTGTTATGGAACTCCAATTTTCCGTGCAAGTATGCCGACTGTCTGTTGATGAGTTGAATAGATGATGTCATCCTGGCTTCTGACGGTGAATATTTTTTGTATATGATTTTGTGCTCCATAATTTAGGGAGCTGGCATTTGTTTTTCACAAAAGCAAAATAACCCTTTAGAAAGGCATCGGGGTTTTTAAG

Fln Alignment:

sp_v1.1_unigene15841___MIDTVNCPDCNKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDXXXXXXXXXXXXXYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLHPHAARLIPDWFAKEEDLKNLCAP
B8LMH3_______________MIDTVSCPDCKKQTEVVFDHSAGDTVCVECGLVLEAHSIDETSEWRTFANETGDNDPVRVGGPSNPLLTDGGLSTVISKPNGASGDFLSSSLGRWQNRGSNPDRSLIMAFKTIGTMSDRLGLVATIKDRANEIYKKVEDSKSIRGRNQDAILAACLYIACRQEDKPRTVKEICSVANGASKKEVGRAKEFIVKQLEEEMGKSMEMGTIHAGDFLRRFCSHLGMGHQAVKAATEAVKKSEELDIRRSPISIAAAAIYMISQLSEEKKLLRDISRATGVAEGTIRNSYKDLYPHAARLIPDWFAKEEDLKNLCAP

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
665	94			5	0.997984
673	5			94	0.997984
677	5			94	0.9982
678		5	94		0.9982
682			5	94	0.998397
683		5	94		0.998397
1498	12		87		0.992554
1541	20	80			0.995493
1737			16	83	0.994512
1748	50	50			1.0
2009		15		84	0.999986

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain