SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15840

Length: 2040 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15840
GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGGAGGTCTTTTGTATCACACTCGTCCTCGGCTGTGGACTTCGGTTTTTGCTTGGGTTGTGGACGGTGGCGAGGTGTGTCTGTTCGAAGAAACCCTAGTCTCTCGCATATTCGGACCCACAGGTGTTCCGGCTGGTTTCTGAGCGCAAGAGTCGAAGAAAAGCTGCTCTGTAACGGCAGGGCAGTCAGGCCAGTCTTAAGTTGTTACGTTATGGGAAAGGGGAAGAACAAGGGAAAGTCGATGGCCAACGACAAGGTCGAGGTCGAGGTCGAGAAGGAGATCTCTGTTTCTGAGAAGGTGGAAACCATAGAAGAGCCTAAGGTAGACAAGGATTCTGAAAAGCTCGACGAACCCGCGAACATGGCTATAGATGAAGCTGCTGATGGTGCTCCAGAGGAAAAGACTGGAGGTGAGAAGAACGAGGAAAAGGACGAAGATGCGAAGAAAGGAGACAAGAAATCTGGCAAGAACAAGAAAAAGTTTAAGAAGAATAAAAAGAAGTCGCAGGGTCAGGATGATAAGAAGCCTGAAACAGCCGGTGGTGTGAAGGAAGACATTCAAGGGCTAATATTTATGTGCAACTCGAAAACAAAGGAGGACTGTTTCCGTTATCGTGTTTTTGGGTTGCCTAAGGCGCACAAGGAGCTTGTTGAAAAGGTTACGAATGGAATGCGGCTCTTTTTGTATGACTTCAACCTTCGTCTGATGTATGGAATATACAAGGCTGCAGGTAAAGGTGGATATGAACTTGAACCTGATGCATTCAAGACTTCGAAGAAGCCTTTTCCAGCCCAGGTACGCTTCCGTATTCAGAAGGAATGCTTGCCATTGCCAGAGGAAAAATTCAAGGCTGCGATTAAAGATAATTACTATGGGAAGAACAAGTTCAAGTTTCAACTGAACGCAGAACAGGTTAAAAAGTTGTCCCAGCTGTTTCGACCGGTACCTGCTCAGAACTCTCGTGGTCCACGAGACAGTAGGCCTGCGAAACCTGTTCGTGATAATGCTAGGGTTCGTGATAATGCTAGGGCACCAAGACGTGTACCATTTGTTGATCAGGTTCCCCAAGTTCCATTATATCGACCTGACACAGTATTGCCTCAGCGTGCACCATTGCTTGATGCTTATGCTTTGCAAGCATCAGATCCGTATGCCTCTGTGTATCAGAGGCAGGCCCTACCTCCTGCTGATCCATTGCCTGTGAGGAATGGGTTGTTATCTGATATTGATTATCGCGGGGTAGATCCAGGGCTTGAATATTTACACCGTCAGAGAATAAGAGAACGTGTTTTAGAGCAGAATTATCTTGATGAGATCAGTAGGCCTTATGTGCCAAGAGAGGCTGACTACGCTGATGCTGCCCTTCGTAGAGCTGACTTCACATCTCCTCCTGGACGTTCATATCCTTCACTCTTAGGTTCATCTTCACTGCTAGGGTCATCTTCACTGTATCGGTACTGATTGAGATTTTATAATTTCTGGATGTTTTGGTAGCGTACATTTTTGAATTATCTTTGGAGACTGGAATCATAAGGAGCTTGATAGTACAGTCGGCACAAACATTGCTATGGAAAAGAACGTGCTATTTGTTTGACTTTTGGTTTTAAGTCCAGCGTCTTTGGTTACCTGTACAATTTTTGGTACAATTATTTAAAGACATGCAACTGATTTAAAATTTCGGTTTTGGCTTTCAGTTTGATTTGTTAGGTCGGATTGCAAATATATCTTAATTCGTTGAAAATATATCGATTTGTCTGGTTTAGTTCTATAGTTCTATTTTTAGAATGTAATTTGTTGTTTTTAGTGTTAATCAGTGGTCGTATTTTGAAGTAGGTTTGTGAATGTGATACAAACCTGTAAGCTTTCGAGTAGAAGTTGCAACTATTATAATAGTGTAACTACCCATAATTTGTTTGTCTTGTTGTCTAGCTTGAACTAAAGCGCGTGGCTGCCTTTTCATCACGTTGGCTGT

Ace file of the UniGene sp_v1.1_unigene15840

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Dev_Cell_Death multi-domain protein	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	protein	-	-	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Development/cell death domain	IPR013989	-	0.0	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQS0

Fln msg:

Fln protein: MGKGKNKGKSMANDKVEVEVEKEISVSEKVETIEEPKVDKDSEKLDEPANMAIDEAADGAPEEKTGGEKNEEKDEDAKKGDKKSGKNKKKFKKNKKKSQGQDDKKPETAGGVKEDIQGLIFMCNSKTKEDCFRYRVFGLPKAHKELVEKVTNGMRLFLYDFNLRLMYGIYKAAGKGGYELEPDAFKTSKKPFPAQVRFRIQKECLPLPEEKFKAAIKDNYYGKNKFKFQLNAEQVKKLSQLFRPVPAQNSRGPRDSRPAKPVRDNARVRDNARAPRRVPFVDQVPQVPLYRPDTVLPQRAPLLDAYALQASDPYASVYQRQALPPADPLPVRNGLLSDIDYRGVDPGLEYLHRQRIRERVLEQNYLDEISRPYVPREADYADAALRRADFTSPPGRSYPSLLGSSSLLGSSSLYRY*

Protein Length: 418

Fln nts: GGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTAAGCAGTGGTATCAACGCAGAGTACATGGGGGAGGTCTTTTGTATCACACTCGTCCTCGGCTGTGGACTTCGGTTTTTGCTTGGGTTGTGGACGGTGGCGAGGTGTGTCTGTTCGAAGAAACCCTAGTCTCTCGCATATTCGGACCCACAGGTGTTCCGGCTGGTTTCTGAGCGCAAGAGTCGAAGAAAAGCTGCTCTGTAACGGCAGGGCAGTCAGGCCAGTCTTAAGTTGTTACGTT_-_ATGGGAAAGGGGAAGAACAAGGGAAAGTCGATGGCCAACGACAAGGTCGAGGTCGAGGTCGAGAAGGAGATCTCTGTTTCTGAGAAGGTGGAAACCATAGAAGAGCCTAAGGTAGACAAGGATTCTGAAAAGCTCGACGAACCCGCGAACATGGCTATAGATGAAGCTGCTGATGGTGCTCCAGAGGAAAAGACTGGAGGTGAGAAGAACGAGGAAAAGGACGAAGATGCGAAGAAAGGAGACAAGAAATCTGGCAAGAACAAGAAAAAGTTTAAGAAGAATAAAAAGAAGTCGCAGGGTCAGGATGATAAGAAGCCTGAAACAGCCGGTGGTGTGAAGGAAGACATTCAAGGGCTAATATTTATGTGCAACTCGAAAACAAAGGAGGACTGTTTCCGTTATCGTGTTTTTGGGTTGCCTAAGGCGCACAAGGAGCTTGTTGAAAAGGTTACGAATGGAATGCGGCTCTTTTTGTATGACTTCAACCTTCGTCTGATGTATGGAATATACAAGGCTGCAGGTAAAGGTGGATATGAACTTGAACCTGATGCATTCAAGACTTCGAAGAAGCCTTTTCCAGCCCAGGTACGCTTCCGTATTCAGAAGGAATGCTTGCCATTGCCAGAGGAAAAATTCAAGGCTGCGATTAAAGATAATTACTATGGGAAGAACAAGTTCAAGTTTCAACTGAACGCAGAACAGGTTAAAAAGTTGTCCCAGCTGTTTCGACCGGTACCTGCTCAGAACTCTCGTGGTCCACGAGACAGTAGGCCTGCGAAACCTGTTCGTGATAATGCTAGGGTTCGTGATAATGCTAGGGCACCAAGACGTGTACCATTTGTTGATCAGGTTCCCCAAGTTCCATTATATCGACCTGACACAGTATTGCCTCAGCGTGCACCATTGCTTGATGCTTATGCTTTGCAAGCATCAGATCCGTATGCCTCTGTGTATCAGAGGCAGGCCCTACCTCCTGCTGATCCATTGCCTGTGAGGAATGGGTTGTTATCTGATATTGATTATCGCGGGGTAGATCCAGGGCTTGAATATTTACACCGTCAGAGAATAAGAGAACGTGTTTTAGAGCAGAATTATCTTGATGAGATCAGTAGGCCTTATGTGCCAAGAGAGGCTGACTACGCTGATGCTGCCCTTCGTAGAGCTGACTTCACATCTCCTCCTGGACGTTCATATCCTTCACTCTTAGGTTCATCTTCACTGCTAGGGTCATCTTCACTGTATCGGTACTGA___TTGAGATTTTATAATTTCTGGATGTTTTGGTAGCGTACATTTTTGAATTATCTTTGGAGACTGGAATCATAAGGAGCTTGATAGTACAGTCGGCACAAACATTGCTATGGAAAAGAACGTGCTATTTGTTTGACTTTTGGTTTTAAGTCCAGCGTCTTTGGTTACCTGTACAATTTTTGGTACAATTATTTAAAGACATGCAACTGATTTAAAATTTCGGTTTTGGCTTTCAGTTTGATTTGTTAGGTCGGATTGCAAATATATCTTAATTCGTTGAAAATATATCGATTTGTCTGGTTTAGTTCTATAGTTCTATTTTTAGAATGTAATTTGTTGTTTTTAGTGTTAATCAGTGGTCGTATTTTGAAGTAGGTTTGTGAATGTGATACAAACCTGTAAGCTTTCGAGTAGAAGTTGCAACTATTATAATAGTGTAACTACCCATAATTTGTTTGTCTTGTTGTCTAGCTTGAACTAAAGCGCGTGGCTGCCTTTTCATCACGTTGGCTGT

Fln Alignment:

sp_v1.1_unigene15840___MGKGKNKGKSMANDXXXXXXXXXXXXXXXXXTIEEPKVDKDSEKLDEPANMAIDEAADGAPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPETAGGVKEDIQGLIFMCNSKTKEDCFRYRVFGLPKAHKELVEKVTNGMRLFLYDFNLRLMXXXXXXXXXXXXELEPDAFKTSKKPFPAQVRFRIQKECLPLPEEKFKAAIKDNYYGKNKFKFQLNAEQVKKLSQLFRPVPAQNSRGPRDSRPAKPXXXXXXXXXXXXXXXXXXFVDQVPQVPLYRPDTVLPQRAPLLDAYALQASDPYASVYQRQALPPADPLPVRNGLLSDIDYRGVDPGLEYLHRQRIRERVLEQNYLDEISRPYVP
B8LQS0_______________MGKGKNKGKQMANDKVEVEKEISVTEVEIKEVV---KVSKDSEKSDEPTNMATDQVAD--EEKTGGEKNEENKDENVNKGEKKSGKAKKKKSKKNKKLQTQDDKKPETTGGTKDDLAGLIFMCNSKTKQDCFRYRVFGLPKSNKELVEKVTNGMRLFLYDFDLRLMYGIYKAAGSGGYDLEPEAFKSTKKPFPAQVRFRIQKECLPLSEEKFKVAIKDNYYGKKKFKFELNAEQVKNLVQLFKPVPAQNSRGPRDSRPGRP-------SRVAREPRRAPFVDQVPQVPLYRPDTVLPQRAPYVDAYALQASDPYASVYQRQALPPSDPLPVRNGLVSDFDYRGVDPGLEYLHRQRIREQI----YLDEINRTYVP

SNPs (tot: 61)

Position	A %	C %	G %	T %	Probability
72		8	83	8	0.998844
73	8	8	70	12	1.0
74	8		91		0.999766
79	3	90	6		0.997073
81	3	3	6	87	0.992016
82		6	6	87	0.992016
83			6	93	0.999153
525	87		12		0.992554
526	87	12			0.992554
528	87			12	0.992554
529	87		12		0.992554
538	75			25	0.996473
541	66			33	0.997452
544	66	33			0.997452
545			66	33	0.997452
546	33	33			0.997753
938			20	80	0.995493
939			20	80	0.995493
940	80	20			0.995493
1104		12		87	0.992554
1111			88	11	0.923564
1113		11	88		0.923564
1114			11	88	0.923564
1116	11	88			0.923564
1117		88	11		0.923564
1119	11			88	0.923564
1120			11	88	0.923564
1121		10		90	0.90298
1122		10	90		0.90298
1125			90	10	0.90298
1126	90			10	0.90298
1127		10		90	0.90298
1131		10	90		0.90298
1132		10		90	0.90298
1133		10		90	0.90298
1134	10	90			0.90298
1135		90	10		0.90298
1136		90	10		0.90298
1137		90		10	0.90298
1139	90	10			0.90298
1296	93		6		0.999453
1297			6	93	0.999453
1342	97		0		0.963792
1344	98			1	0.997095
1347	97	1	0		0.965388
1349	98			1	0.997095
1350	98		1		0.997095
1352	98			1	0.997095
1354	98	1			0.99732
1357			98	1	0.99732
1358		2		97	0.99763
1359	1		98		0.99732
1685		97		2	0.964186
1742		6		93	0.999999
1765	12		87		0.992554
1766	12			87	0.992554
1767	12			87	0.992554
1768	12			87	0.992554
1769	12		87		0.992554
1806		20		80	0.995493
1807		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
322	341	AGGTCG AGGTCG AGGTCG AG	20

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain