SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15833

Length: 1877 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15833 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitogen activated protein kinase 6 n=2 Tax=Pinaceae RepID=C7ENI3_PINTA	-	-	98%
FL-Next	tr=Mitogen activated protein kinase 6; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	map kinase	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Mitogen-activated protein kinase.	EC:2.7.11.24	-	0.0	91%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	91%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	91%
Blast2go	conjugation	GO:0000746	Biological Process	91%
Blast2go	mitosis	GO:0007067	Biological Process	91%
Blast2go	cell division	GO:0051301	Biological Process	91%
Blast2go	MAP kinase activity	GO:0004707	Molecular Function	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	91%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	91%
Blast2go	MAP kinase, conserved site	IPR003527	-	91%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	91%
Blast2go	JNK MAP kinase	IPR008351	-	91%
Blast2go	Protein kinase-like domain	IPR011009	-	91%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	91%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	91%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C7ENI3

Fln msg:

Fln protein: MEAAAAPVQSTDTLMSDAPQAAGSNLMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCERMLTFDPNQRITVEEALAHPYLANLHDISDEPTCAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ*

Protein Length: 392

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTTTGTTGTTGTGTACATAAGCATTTCGATTCTCTTCGCGTCTGCAGAAATCCTTTCTAGGCCACTCACAGGTCAAGGGTTCGATCTACGCCCCGACATCTTTGGCTCTGTTCCCCTCAGATTTCAGCG_-_ATGGAGGCCGCAGCAGCTCCAGTTCAATCGACGGACACGCTCATGTCCGACGCGCCTCAGGCCGCCGGGTCGAATCTCATGGACAACATCCCTGCAGTACTCAGTCACGGCGGCCGCTTCGTGCAGTATAATATCTTTGGGAATATTTTCGAAGTCACAGCCAAGTACAAACCACCTCTGTTGCCTATCGGGAAAGGAGCTTACGGGATCGTCTGCTCTGCAATGAACTCTGAGACAAAAGAGCAAGTTGCCATCAAGAAGATAGCCAATGCCTTTGACAATCGCATAGATGCAAAGCGAACTCTTCGGGAAATCAAGTTGCTCCGACATATGGATCATGAAAATGTAGTTGCCATAAGAGACATTATACCTCCTCCACAAAGAGAAGCCTTTGATGATGTATACATTGCATATGAGTTAATGGATACTGATCTCCATCAAATTATTCGCTCCAATCAAGGCTTATCTGAGGAACACTGTCAGTACTTTTTGTATCAGATTTTGCGAGGATTGAAATATATACACTCTGCAAATGTCCTTCATAGGGACTTGAAGCCCAGCAATCTTCTATTGAATGCAAATTGTGATCTGAAGATATGTGATTTTGGTTTGGCTCGGATTACTTCTGAAACCGATTTCATGACCGAATATGTGGTTACCAGATGGTATAGAGCTCCAGAATTGCTGCTGAATTCATCAGATTATACTGCAGCCATTGATGTCTGGTCAGTAGGCTGTATTTTCATGGAATTGATGAACAGACAACCCTTATTCCCTGGAAGGGATCATGTGCATCAGCTGCGTTTATTGACAGAGTTGATTGGCACGCCAACTGAGGCTGACCTTGGATTTGTTCGGAGTGATAATGCTAGAAGATTTATTCGGCAACTGCCACAGTATCCAAGGCAGTCATTTACTCAAAAATTTCCTCATGTGCATGCATTAGCAATTGACCTTTGTGAAAGAATGCTGACATTTGATCCAAATCAGAGGATCACAGTGGAAGAGGCACTTGCTCATCCGTACCTGGCAAATCTACATGATATCAGTGATGAACCCACTTGTGCTATGCCTTTCAGCTTTGATTTTGAGCAGCATACCTTAACAGAGGATCAGATGAAAGAGCTGATCTATAGAGAGGCTCTGGTTTTTAATCCAGAGTATGCACAGTAA___AGTAACATTTTGTGCAGACAGTGGTTACAACTTTGAAAATTGAAAGCTGGCCTATTTTCTTGTTTGTAGCAGTCATAGTGTTATAAATATTTATTGAGTTTTGGGAGCAATGTAAATATGTGTATTAAAACCACATTTGAGTCCAGGGCAAGTTGTAAGGGGGATAATGATTGAAGGGGTGTAAAGCATTTATATTGGAGTATGTCAACCTGATATGCTACAACTTGGTGAGATGCATTGTGCATGTATGAGTCACAGACCTGAACACTGCGGTAAAACTGTATTATGCTTTATTCTTCTTTATCTTCAAACTTCAAGGGGTTGTATGAAGATAATTTTTGTTAGAATACAAGTGAAGAAAAGTTGAGTCTGGCAGTTTGCCACTATATGCTCAATATGGTATTTTGTCTAATTCTCCTTTCAGATAAGTGATGAACTTGGACCTTTGGCTATTGTGTACTGATATGAATAAAATAAATTCCTGCTTTCTTCCCCAAGATCGTTGGTTTTGGATTTTCAGCTTTTGATTGTCTGATTTATCTACAA

Fln Alignment:

sp_v1.1_unigene15833___MEAAAAPVQSTDTLMSDAPQAAGSNLMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSSDYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCERMLTFDPNQRITVEEALAHPYLANLHDISDEPTCAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ
C7ENI3_______________MEAAAAPVQSTDTLMSDAPQAAGSNPMDNIPAVLSHGGRFVQYNIFGNIFEVTAKYKPPLLPIGKGAYGIVCSAMNSETKEQVAIKKIANAFDNRIDAKRTLREIKLLRHMDHENVVAIRDIIPPPQREAFDDVYIAYELMDTDLHQIIRSNQGLSEEHCQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARITSETDFMTEYVVTRWYRAPELLLNSADYTAAIDVWSVGCIFMELMNRQPLFPGRDHVHQLRLLTELIGTPTEADLGFVRSDNARRFIRQLPQYPRQSFTQKFPHVHALAIDLCEKMLTFDPNQRITVEEALAHPYLANLHDISDEPICAMPFSFDFEQHTLTEDQMKELIYREALVFNPEYAQ

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
891	10		90		0.90298
1238		90	10		0.999898
1245	5	15		80	1.0
1246		20	80		1.0
1247	20			80	1.0
1248	15		5	80	1.0
1249		85	15		1.0
1250		85	14		1.0
1256		20		80	1.0
1257	80		20		1.0
1757	7		92		0.999602
1763	92	7			0.999602
1802	10			89	0.999919
1805	5	15	78		1.0
1807	84	10	5		0.999846
1808	16	5	72	5	1.0
1831		8	16	75	0.99999
1833	8			75	0.99999
1843		75	16	8	0.99999
1844	62	12	25		1.0
1845	62	12		25	1.0
1847	85	14			0.993533
1848	42	42		14	1.0
1849	50	16	33		1.0
1850	83	16			0.994512
1851	66	33			1.0
1852	50		33	16	1.0
1854	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain