SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15826

Length: 2024 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15826
CAGGGCTTCCTCCTCTTCTTCATCTTCCTTGGGTAAGGACGTGGTATCTGGCGTTAACGATGGAAGATCTTTTATCAGGTTAGATAATATAACATTTCATAGGAGAAAAGAAATTGCTGCTCAAGATTCAAATATGGACCATGACACTGGGCTTGTTCAGGTTCTTATCTTTGAGGCAGCTGATCGGGATAACATAGGTGGTTCACCCTATGGTGGTCAGAAGGCTATTTGCTGTACTCCAGATCTTTCAAAGCTAGAAAATTGCAAACAGGGTGAAGTCATTTGGCGGCCTTCAGCGAAAGATGCCACCTGGCCTTATGTGACAAGCGTCCGCTTCCATGGAGATGCTACAGAAGTCACCTTGGAAACTATAAATGTGCCAATTACCATGACAGGAATGTATAACTTGTATTTTATATTTTGTGAACCTAAACTTAAAGGGCTGGTAATGACTGGAAAGACGATATGGAAAAATCCCACAGGTTATCTACCTGGGAGGATGGCACCACTAATGACCTTTTATGGTCTAATGTCCCTTGCATACCTTCTCCTTGGGATTGTTTGGTTTTCCCAGTATGCCAGATTTTGGAGAGAAATTTTACAGCTTCAGAACTGTATTACTCTTGTTATTTCTTTGGGTATGTTTGAAATGACACTGTTGTACTTTGAATACGCAAATTTCAATGCAACTGGAATCAGGTCCACAGGTATTACTATTTGGGCTGTTACATTTGGTGCTGTCAAGAGAACCATATCCCGACTCATTATCTTGGTTGTTTCAATGGGCTATGGTGTAGTAAGGCCCACTCTAGGAGGTCTTACTTCGAAGGTGCTTCTTCTGGGAGCAACATTCTTCCTGGCATCTGAGTTGCTTGATCTTGTGGAGAATGTGGGGTCCATCAATGATCTATCAGGAAAAGCCAGATTGTTTCTTGTTCTGCCAGTTGCAATTGTGGACGCTTTCATCGTTATTTGGATTTTTACTTCTTTGTCTAAAACATTGGAGAAACTTCAGGCAAGGAGGTCGCTTGCTAAGCTAGACATTTACAGGAAGTTCACTAATGCATTGGCAGTTGCTGTATTTGTTTCCGTGGCATGGATTGGATATGAGCTGTATTTCAAGGCAACTGATCCGTTCAGTGAGCGTTGGCAGAGTGCATGGGTTATAAGTGCATTTTGGCATGTTCTTTCATTTTCTTTGCTTTGTGTCATCTGTGCACTTTGGGCTCCATCTCAAAACTCCACTAGATATGCTTACTCAGATGATGTAGGAGAAGAGTTTGGTGAAGAAGAGACGATGTCTTTGACCAAGTCGTTAGCAAAGGTTGACGGTGATGAAAACTCTGCAATGCCAGAGAAGAAAGAGAGGAAAGAGACTAGCAAAGATGTTTTCAGCTTGAATGATGATACAGAAGAAGATAAAAGGGAATAGATTACGGCCTATTTATCGACTGGGAAGGGTGCAGGGCAATCTAGGCATTTCATGCAGTTGACAGTTCAATGTGCAAACATGTTGCTCTTAACTGTGTTTTATTAGCATTTTCATTTCATATCATCCTAGGAGTCATTGACTGGAGATGGAAGGGTTTAGCTATTAGTTCCTTAGAACAGTAATTTATCTCCGAATTGTGCTATGAACATGAGTTATGGTTTCAAAGCTCTATTTGAGAATCTAATATTGAATTTATTTATGTAAAAGTCTATATTGCTATAGAGCTTTTTTTAAGAGCTTCTGGCCTGATGATGAAAGAGGGAGTTGAGGAAAATCCAGGAGACGGATGGAAGAGTGAACTGGTTGGACTCCAATAACTCATATTGTAGTTGGCTGATTGCTGCCAGAATTAATTGTTGTTGAAATAAAGTATATTATCGTTACTTTAAATGATCTGCAAGTACCAGCATCTGATGTGCTTTTCTGGACAAGAGAGTGCACGCCAAAGCATGCAGTAGATTTTGTATAGGACAGTAAAAACTAAGACAGGAAGGGGATTTCAATGGCTATAAAAAGTTTTGCATAAGGTGGT

Ace file of the UniGene sp_v1.1_unigene15826

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lung seven transmembrane receptor [Medicago truncatula]	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	lung seven transmembrane receptor family expressed	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transmembrane receptor, eukaryota	IPR009637	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRU5

Fln msg: your sequence is shorter than subject: 477 - 528

Fln protein: RASSSSSSSLGKDVVSGVNDGRSFIRLDNITFHRRKEIAAQDSNMDHDTGLVQVLIFEAADRDNIGGSPYGGQKAICCTPDLSKLENCKQGEVIWRPSAKDATWPYVTSVRFHGDATEVTLETINVPITMTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE*

Protein Length: 478

Fln nts: CAGGGCTTCCTCCTCTTCTTCATCTTCCTTGGGTAAGGACGTGGTATCTGGCGTTAACGATGGAAGATCTTTTATCAGGTTAGATAATATAACATTTCATAGGAGAAAAGAAATTGCTGCTCAAGATTCAAATATGGACCATGACACTGGGCTTGTTCAGGTTCTTATCTTTGAGGCAGCTGATCGGGATAACATAGGTGGTTCACCCTATGGTGGTCAGAAGGCTATTTGCTGTACTCCAGATCTTTCAAAGCTAGAAAATTGCAAACAGGGTGAAGTCATTTGGCGGCCTTCAGCGAAAGATGCCACCTGGCCTTATGTGACAAGCGTCCGCTTCCATGGAGATGCTACAGAAGTCACCTTGGAAACTATAAATGTGCCAATTACCATGACAGGAATGTATAACTTGTATTTTATATTTTGTGAACCTAAACTTAAAGGGCTGGTAATGACTGGAAAGACGATATGGAAAAATCCCACAGGTTATCTACCTGGGAGGATGGCACCACTAATGACCTTTTATGGTCTAATGTCCCTTGCATACCTTCTCCTTGGGATTGTTTGGTTTTCCCAGTATGCCAGATTTTGGAGAGAAATTTTACAGCTTCAGAACTGTATTACTCTTGTTATTTCTTTGGGTATGTTTGAAATGACACTGTTGTACTTTGAATACGCAAATTTCAATGCAACTGGAATCAGGTCCACAGGTATTACTATTTGGGCTGTTACATTTGGTGCTGTCAAGAGAACCATATCCCGACTCATTATCTTGGTTGTTTCAATGGGCTATGGTGTAGTAAGGCCCACTCTAGGAGGTCTTACTTCGAAGGTGCTTCTTCTGGGAGCAACATTCTTCCTGGCATCTGAGTTGCTTGATCTTGTGGAGAATGTGGGGTCCATCAATGATCTATCAGGAAAAGCCAGATTGTTTCTTGTTCTGCCAGTTGCAATTGTGGACGCTTTCATCGTTATTTGGATTTTTACTTCTTTGTCTAAAACATTGGAGAAACTTCAGGCAAGGAGGTCGCTTGCTAAGCTAGACATTTACAGGAAGTTCACTAATGCATTGGCAGTTGCTGTATTTGTTTCCGTGGCATGGATTGGATATGAGCTGTATTTCAAGGCAACTGATCCGTTCAGTGAGCGTTGGCAGAGTGCATGGGTTATAAGTGCATTTTGGCATGTTCTTTCATTTTCTTTGCTTTGTGTCATCTGTGCACTTTGGGCTCCATCTCAAAACTCCACTAGATATGCTTACTCAGATGATGTAGGAGAAGAGTTTGGTGAAGAAGAGACGATGTCTTTGACCAAGTCGTTAGCAAAGGTTGACGGTGATGAAAACTCTGCAATGCCAGAGAAGAAAGAGAGGAAAGAGACTAGCAAAGATGTTTTCAGCTTGAATGATGATACAGAAGAAGATAAAAGGGAATAG___ATTACGGCCTATTTATCGACTGGGAAGGGTGCAGGGCAATCTAGGCATTTCATGCAGTTGACAGTTCAATGTGCAAACATGTTGCTCTTAACTGTGTTTTATTAGCATTTTCATTTCATATCATCCTAGGAGTCATTGACTGGAGATGGAAGGGTTTAGCTATTAGTTCCTTAGAACAGTAATTTATCTCCGAATTGTGCTATGAACATGAGTTATGGTTTCAAAGCTCTATTTGAGAATCTAATATTGAATTTATTTATGTAAAAGTCTATATTGCTATAGAGCTTTTTTTAAGAGCTTCTGGCCTGATGATGAAAGAGGGAGTTGAGGAAAATCCAGGAGACGGATGGAAGAGTGAACTGGTTGGACTCCAATAACTCATATTGTAGTTGGCTGATTGCTGCCAGAATTAATTGTTGTTGAAATAAAGTATATTATCGTTACTTTAAATGATCTGCAAGTACCAGCATCTGATGTGCTTTTCTGGACAAGAGAGTGCACGCCAAAGCATGCAGTAGATTTTGTATAGGACAGTAAAAACTAAGACAGGAAGGGGATTTCAATGGCTATAAAAAGTTTTGCATAAGGTGGT

Fln Alignment:

sp_v1.1_unigene15826___SGVNDGRSFIRLDNITFHRRKEIAAQDSNMDHDTGLVQVLIFEAADRDNIGGSPYGGQKAICCTPDLSKLENCKQGEVIWRPSAKDATWPYVTSVRFHGDATEVTLETINVPITMTGMYNLYFIFCEPKLKGLVMTGKTIWKNPTGYLPGRMAPLMTFYGLMSLAYLLLGIVWFSQYARFWREILQLQNCITLVISLGMFEMTLLYFEYANFNATGIRSTGITIWAVTFGAVKRTISRLIILVVSMGYGVVRPTLGGLTSKVLLLGATFFLASELLDLVENVGSINDLSGKARLFLVLPVAIVDAFIVIWIFTSLSKTLEKLQARRSLAKLDIYRKFTNALAVAVFVSVAWIGYELYFKATDPFSERWQSAWVISAFWHVLSFSLLCVICALWAPSQNSTRYAYSDDVGEEFGEEETMSLTKSLAKVDGDENSAMPEKKERKETSKDVFSLNDDTEEDKRE
C0PRU5_______________SGPNNGKSYIKFENITLRRTREAAAQHSGMEHRTGLVQAIIFEASDRDDIGGSLYGGRKAICCTPDLAKMEGCKQGEVIRRQSAGDPKWPHVLNIEFSGDDIATTMSAQSVTIPKTGMYNLYFIFCEPTLKGLLLDGKTIWKNPTGYLPGRMAPLMTFYGFMSLVYLLLGVIWFSQYIRFWKDVLQLQNCITLVIALGMFEMTLWYFEYANFNATGIRPMGITFWAVTFGAVKKTVARLLLLVVSMGYGVVRPTLGGLTSKVLLLGATYFLASELLDVVENVGTIDDLSGNTRLFLVLPVAILDAFLILWIFTSLSKTLEKLQARRRLAKLEIYRKFTNALAVAVIVSVAWIGYELYFKATDPFSERWQSAWIITGFWHMLSFALLCVLCVLWAPSQSSTRYAYSEEVGEDFDEEEALALTTSTSVVDVD---VKQEMKERKAVNTDVFSLDEDTEEDKRE

SNPs (tot: 55)

Position	A %	C %	G %	T %	Probability
399		12		87	0.992554
402	87		12		0.992554
405	87	12			0.992554
410			12	87	0.992554
411	87	12			0.992554
413			12	87	0.992554
415		12		87	0.992554
454	22			77	0.999999
595	87		12		0.992554
774		4		87	0.999414
934		10		90	0.999898
1009	90		10		0.999898
1182	50		50		1.0
1186		16		83	0.994512
1271	25		75		0.996473
1273	75	25			0.996473
1274			75	25	0.996473
1275	75		25		0.996473
1276	75	25			0.996473
1278	66		33		0.997452
1280	33			66	0.997452
1281			33	66	0.997452
1282	33			66	0.997452
1306	33		66		0.997452
1414	75	25			0.996473
1416	75			25	0.996473
1417	75	25			0.996473
1419	75			25	0.996473
1420			25	75	0.996473
1422	75	25			0.996473
1423	75	25			0.996473
1424	75			25	0.996473
1425			75	25	0.996473
1428	75	25			0.996473
1435		25		75	0.996473
1438			75	25	0.996473
1439		25	75		0.996473
1440	25	75			0.996473
1512	60	20	20		0.99255
1514		20	60		0.99255
1515			20	80	0.995493
1516			20	80	0.995493
1518	20	80			0.995493
1519		20		80	0.995493
1520		80	20		0.995493
1522		20		80	0.995493
1523	80		20		0.995493
1524	60	20	20		0.99255
1526	20			80	0.995493
1529		20	80		0.995493
1530	20			80	0.995493
1531		20		80	0.995493
1533		20		80	0.995493
1926	80		20		0.995493
1961	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain