SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15819

Length: 1950 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15819
CGTCGTGACCTTGGCTGTCACTCAACACCACAACCCACCCAACTATCCCTCGCTTTTAGGAATCGGGCCGAAAAGATTCAGAAGTTCTCCATATTGAAATATCAATGGTCAACCTCGTAGACGTGCTCTAGTCAGCTATAACATTTCATGATAAAGTGACGACTATTCGCACAAGTGAAGGGAGGCGGAGAAAACCCTGTGTAAACCCTGTTTTCTGTAACAATGGCTCCGACCATCCGACTGTTTACATTATCAATACTATTTCTGTTCCCCATTTTTTCAGTTGGGTTTTCTCCCGAGAGTCCGACGGATCGGCACATTCTCGTGCTCGTGGACGATCTAGCCATCAAGTCATCTCATTCAATTTTCTTCAAGACACTCACAGATCGCGGTTTCGATCTCGACTTCAAGCTCGCACATGATCCCAAGCTCGCGCTTCAGAGATACGGCCAGTACTTGTACGATGGACTCATTCTCTTTGCCCCTTCTGTTGACAATCTGGGGGGCTCATTGGATTTGTCTGCAATTTTGGACTTTGTTGACTCCGGCCATGATTTGATTCTTGCTGCTGACACTACCAGCTCTGATCTCATTCGTGATATCGCTGCTGACTGCGGGGTTGATTTTGATGAAGACCTGGGTGCTTTGGTTATTGATCACACTAGCTATGCTGTTTCGAAAACTGACAGTGATCATACTTTGATTGTGAGTGACGATGTAATCGATTCCAAGGTTATTTTGGGAGAGAAAAAGCTCGAGGCTCCCGTGCTTTTCCGAGGGATTGCTCATTCTTTAAATCCTGCAAACAGCCTGGTGCTGAAAGTGCTATCTGCTTCATCTTCTGCATACTCTGCAAATCCCAAAGCTGATCTATCTAGTCCTCCAGCACTGATAGGATCTTCTATTTCCTTGGTGTCAGTTGTGCAGGCTAGAAATAATGCTCGGGTTCTTATTTCTGGATCCCTTGATTTATTTAGCAACAAGTTTTTCAAATCGCCTGTTAAAAAGTTTGGCAGTTCAGTTGAGCATGCAAGAAGTGGCAATGAGCAGTTTGTGTCTGAATTAAGCAAGTGGGTTTTCCATGAAAGGGGTCATCTTAAGGCTGTAAATGTTCAGCATCATAAAGTTGGGGAGACTTTTGAACCTGCTATGTATCGAATCACTGATCACCTGGAATACTCCGTTGAAATTTATGAATGGACTGGAAAGGATTGGAAGCCTTACATTGCAGATGACGTACAAGTGCAGTTTTACATGATGAGTCCTTATGTTCTGAAGACGTTGTCACATGACAATAAAGGATTATATTCTGTTTCGTTCCAAGTTCCTGACGTTTATGGTGTTTTCCAATTTAAAATTGAGTATCAAAGGGTTGGTTACACAAGTCTCTCTCTGAGCAAGCAGATTCCTGTAAGGCCTTTCAGGCACAACGAATATGAAAGGTTCATTAAAGCTGCCTATCCATATTATGGAGGTGCATTTTCCATGATGACAGGTTTCTTTATTTTTGGTTTGTTCTTCTTATATCATAAATAAAGCAAGGTGATAGAAAGGGCTCTGTACTAGAATGCGGGTTACTGGTAAAAGAAGCATAGAGAGTTATGAGGGGGATGTTGAGCAACATTATAATTCTTAATGTTGGACCATAGGCTAAACTGGCCATTGCTTTTATATGTATCATCTAAATTTGCCCTAGATGAATTTTCTGTTCAGTGTAATTTGAATTTCCTCCAATTCTGGGACAAGCTGAATCTGCTTGAGAAATGAAATTTTGGCAGGATAGTATTCTATTTGATCTCATGTATGATTACATTTTCGTTTGTGAAAATACATCTGCTTGAAAGCAAGATTTGACCTTTCGTCTAATCTTTATAGATGTTTAGGTGCTTCCAGACAAGGGTGTCAACGCACTTTACAGCCATACATTATCAGCTGTATGTATGTATAAAA

Ace file of the UniGene sp_v1.1_unigene15819

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DGL1; DGL1; dolichyl-diphosphooligosaccharide-protein glycotransferase; K12670 oligosaccharyltransferase complex subunit beta	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	dolichyl-di-phosphooligosaccharide-protein glycotransferase -like	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dolichyl-diphosphooligosaccharide--protein glycotransferase.	EC:2.4.1.119	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	N-Glycan biosynthesis	00510	85%
Blast2go	Various types of N-glycan biosynthesis	00513	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	protein N-linked glycosylation via asparagine	GO:0018279	Biological Process	85%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	85%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	85%
Blast2go	plant-type cell wall organization	GO:0009664	Biological Process	85%
Blast2go	dolichyl-diphosphooligosaccharide-protein glycotransferase activity	GO:0004579	Molecular Function	85%
Blast2go	oligosaccharyltransferase complex	GO:0008250	Cellular Component	85%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	85%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	85%
Blast2go	vacuole	GO:0005773	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUT4

Fln msg:

Fln protein: MAPTIRLFTLSILFLFPIFSVGFSPESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDNLGGSLDLSAILDFVDSGHDLILAADTTSSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDVIDSKVILGEKKLEAPVLFRGIAHSLNPANSLVLKVLSASSSAYSANPKADLSSPPALIGSSISLVSVVQARNNARVLISGSLDLFSNKFFKSPVKKFGSSVEHARSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDHLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMMTGFFIFGLFFLYHK*

Protein Length: 439

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACACCACAACCCACCCAACTATCCCTCGCTTTTAGGAATCGGGCCGAAAAGATTCAGAAGTTCTCCATATTGAAATATCAATGGTCAACCTCGTAGACGTGCTCTAGTCAGCTATAACATTTCATGATAAAGTGACGACTATTCGCACAAGTGAAGGGAGGCGGAGAAAACCCTGTGTAAACCCTGTTTTCTGTAACA_-_ATGGCTCCGACCATCCGACTGTTTACATTATCAATACTATTTCTGTTCCCCATTTTTTCAGTTGGGTTTTCTCCCGAGAGTCCGACGGATCGGCACATTCTCGTGCTCGTGGACGATCTAGCCATCAAGTCATCTCATTCAATTTTCTTCAAGACACTCACAGATCGCGGTTTCGATCTCGACTTCAAGCTCGCACATGATCCCAAGCTCGCGCTTCAGAGATACGGCCAGTACTTGTACGATGGACTCATTCTCTTTGCCCCTTCTGTTGACAATCTGGGGGGCTCATTGGATTTGTCTGCAATTTTGGACTTTGTTGACTCCGGCCATGATTTGATTCTTGCTGCTGACACTACCAGCTCTGATCTCATTCGTGATATCGCTGCTGACTGCGGGGTTGATTTTGATGAAGACCTGGGTGCTTTGGTTATTGATCACACTAGCTATGCTGTTTCGAAAACTGACAGTGATCATACTTTGATTGTGAGTGACGATGTAATCGATTCCAAGGTTATTTTGGGAGAGAAAAAGCTCGAGGCTCCCGTGCTTTTCCGAGGGATTGCTCATTCTTTAAATCCTGCAAACAGCCTGGTGCTGAAAGTGCTATCTGCTTCATCTTCTGCATACTCTGCAAATCCCAAAGCTGATCTATCTAGTCCTCCAGCACTGATAGGATCTTCTATTTCCTTGGTGTCAGTTGTGCAGGCTAGAAATAATGCTCGGGTTCTTATTTCTGGATCCCTTGATTTATTTAGCAACAAGTTTTTCAAATCGCCTGTTAAAAAGTTTGGCAGTTCAGTTGAGCATGCAAGAAGTGGCAATGAGCAGTTTGTGTCTGAATTAAGCAAGTGGGTTTTCCATGAAAGGGGTCATCTTAAGGCTGTAAATGTTCAGCATCATAAAGTTGGGGAGACTTTTGAACCTGCTATGTATCGAATCACTGATCACCTGGAATACTCCGTTGAAATTTATGAATGGACTGGAAAGGATTGGAAGCCTTACATTGCAGATGACGTACAAGTGCAGTTTTACATGATGAGTCCTTATGTTCTGAAGACGTTGTCACATGACAATAAAGGATTATATTCTGTTTCGTTCCAAGTTCCTGACGTTTATGGTGTTTTCCAATTTAAAATTGAGTATCAAAGGGTTGGTTACACAAGTCTCTCTCTGAGCAAGCAGATTCCTGTAAGGCCTTTCAGGCACAACGAATATGAAAGGTTCATTAAAGCTGCCTATCCATATTATGGAGGTGCATTTTCCATGATGACAGGTTTCTTTATTTTTGGTTTGTTCTTCTTATATCATAAATAA___AGCAAGGTGATAGAAAGGGCTCTGTACTAGAATGCGGGTTACTGGTAAAAGAAGCATAGAGAGTTATGAGGGGGATGTTGAGCAACATTATAATTCTTAATGTTGGACCATAGGCTAAACTGGCCATTGCTTTTATATGTATCATCTAAATTTGCCCTAGATGAATTTTCTGTTCAGTGTAATTTGAATTTCCTCCAATTCTGGGACAAGCTGAATCTGCTTGAGAAATGAAATTTTGGCAGGATAGTATTCTATTTGATCTCATGTATGATTACATTTTCGTTTGTGAAAATACATCTGCTTGAAAGCAAGATTTGACCTTTCGTCTAATCTTTATAGATGTTTAGGTGCTTCCAGACAAGGGTGTCAACGCACTTTACAGCCATACATTATCAGCTGTATGTATGTATAAAA

Fln Alignment:

sp_v1.1_unigene15819___MAPTIRLFTLSILFLFPIFSVGFSPESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDNLGGSLDLSAILDFVDSGHDLILAADTTSSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDVIDSKVILGEKKLEAPVLFRGIAHSLNPXXXXXXXXXXXXXXXXXXXXXXDLSSPPAXXXXXXXXXXXXQARNNARVLISGSLDLFSNKFFKSPVKKFGSSVEHARSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDHLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGAFSMMTGFFIFGLFFLYHK
A9NUT4_______________MAATIRLFTLSVLFLFPIFSLGFSPESPTDRHILVLVDDLAIKSSHSIFFKTLTDRGFDLDFKLAHDPKLALQRYGQYLYDGLILFAPSVDHLGGSLDLSAILDFVDSGHDLILAADTTTSDLIRDIAADCGVDFDEDLGALVIDHTSYAVSKTDSDHTLIVSDDAINSKVILGGKKLEAPVLFRGIAHSLNPANSLVLKVLSASPSAYSANPKADLSSPPALIGSSISLVSVVQARNNARVLISGSLDLFSNKFFKSPVKRFGSSVEHAKSGNEQFVSELSKWVFHERGHLKAVNVQHHKVGETFEPAMYRITDNLEYSVEIYEWTGKDWKPYIADDVQVQFYMMSPYVLKTLSHDNKGLYSVSFQVPDVYGVFQFKIEYQRVGYTSLSLSKQIPVRPFRHNEYERFIKAAYPYYGGTFSMMTGFFIFGLFFLYHK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
467		76		23	1.0
1244	20		80		0.995493
1259		80		20	0.995493
1313		80		20	0.995493
1428	88		11		0.923564
1435	88		11		0.923564
1499	90			10	0.90298
1823	61		38		1.0
1913	20		80		0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1934	1946	TGTA TGTA TGTA T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain