SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15816

Length: 1891 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15816

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen major allergen No.121 isoform 1 n=1 Tax=Cryptomeria japonica RepID=Q588C0_CRYJA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	pollen major allergen isoform 1	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	79%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		79%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		79%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		79%
Blast2go	Glycosaminoglycan degradation	00531		79%
Blast2go	Metabolic pathways	01100		79%
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	79%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	79%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	79%
Blast2go	apoplast	GO:0048046	Cellular Component	79%
Blast2go	cell wall	GO:0005618	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	79%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	79%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	79%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	79%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	79%
Blast2go	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AED5

Fln msg:

Fln protein: MDTPLHLLFLLLASSAALASANFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRNFNAAATSSFDAAAEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK*

Protein Length: 277

Fln nts: CATACGCATTATATTTAAGCATTTAAAGATTGCACCCATAAAAACATAAGCATTATATTTTGCCATATACAGGATGTAAAATCGCAGAGAGTGTACATGGGATGAGAAGCAGGTAAAACTGCTAACCAAATGGACGGTTCAATAGAATGTAACGATAGTATTAAAGTTCTTTATCATTTCATATTTTCGGAATCTATCTGCAACAGAGAAACATAATCAAATAGACACCTCGATGTATTTTGCTAAATGAATGCAAAAACTGCATTCACACCATTATTTGTATTGCATTAACGTCAAATTTTTACTAAAATCTGAATTATAGCATAATAGGATTTTCAGAGCTTTGAATCTCAAGCTCATATTCCCATTTATTTATTGAAGGAGAACGTAGGGTTCAGAATGATAATAATACTAAGAACGCGGGGGTAGACTGCAGCAACGGTAGACCTTTGCTCGATGCGAATGTCGAGCGCAGGTGTCGCCCTTGGGACACTCACCACAACTTTTCACGTTATGACAAAGATGACCAATCGGAGCGCCATGTTTAGCTGCCACTGCATTTAGCAGGAACGAGACTGCCAGCAGCCATACAAGTGTGAGAAGCCTGCCAATCTTCACCTGTCTTCCTGCCATTTTCAGCGCCGAGACTAAAACACAATTACCTCAACAACGTTAATTTATCTCTTCTCTCGTTTCTGGAACTGCTGCTCCGCATCACAAACTCTTTTCCCAATCCCTAATCGACATCGACATCGACATCGAC_-_ATGGACACACCTCTTCACCTCCTCTTTCTTTTATTGGCCTCCTCGGCAGCTCTTGCTTCTGCAAATTTCTACAATGATGTCGACATTACATGGGGTAATGATCGTGCTAAAATCATTGACAATGGACAACAGTTGCAGCTTACTCTTGACCGCTCTTCTGGTTGTGGTATTCAATCCAAGCAAGAGTATCTATTTGCCAAGATTGATATCCAAATCAAGTTGGTACCGGGCAACTCTGCAGGCACAGTCACTACTTTTTATCTATCATCTCAAGGTCCCAAACACGACGAAATAGATTTCGAATTTCTGGGCAACCTCTCTGGAGATCCTTATATTTTGCACACTAATGTCTTTGCTCAAGGCCTTGGTGGGCGTGAACAACAATTCTACTTGTGGTTCGACCCAACCCTGGATTTCCACACTTACTCCGTGCTCTGGACATCAAACCAAATCATATTTTCTGTAGACGGGAGTCCTGTTCGGGTGTTTAAGAACAGGGAGACAGAGTTGGGTAAAGTGGATAGCAATTATCATTATCCCAAAACCCAAGCAATGAGGGTCTACTCCAGCCTTTGGAATGCAGATGATTGGGCAACCAGGGGTGGGCTTGTGAAGACCGACTGGACTAAAGCTCCCTTTGTTGCAACCTTCCGCAATTTCAATGCTGCCGCTACTTCTTCTTTTGACGCCGCCGCAGAGGAGGTGGCTTTGGAATCGAACCAAGAACAGAGGCAGAGGCTCCAGTGGGTACGAAAGAACTACATGATCTACGATTATTGTGCAGACACCAAGAGATTCCCCCAGGGACCGCCTCCCGAATGCAAATAA___AACCTCAATCCTTTGAATTCAGAGAATGAACTCTGAATTCTTTCCTTCCAAGTATTCTCATTCATTTCTATTACATTAATTCTTTCATTCTTTCTCAGACACACATGTAAAATATTAGAGGGTATCAATCATTTCATTTTGGTACTGGTATACAAAAGCGGGATTCTTTTGATGATTCATCAATGGCTACAGCGTTTCCTTTTTGGTTACCGCATGTTCGCGTTTTACTCTTTTCTGAAAGACACACATACAAAGGCATTGATATATATATATATTTGACAAAATTTAGGATTAACACAC

Fln Alignment:

sp_v1.1_unigene15816___NFYNDVDITWGNDRAKIIDNGQQLQLTLDRSSGCGIQSKQEYLFAKIDIQIKLVPGNSAGTVTTFYLSSQGPKHDEIDFEFLGNLSGDPYILHTNVFAQGLGGREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGSPVRVFKNRETELGKVDSNYHYPKTQAMRVYSSLWNADDWATRGGLVKTDWTKAPFVATFRXXXXXXXXXXXXXXEEVALESNQEQRQRLQWVRKNYMIYDYCADTKRFPQGPPPECK
D5AED5_______________NFYSDFDITWGDDRAKILDNGQQLQLTLDRTSGCGIQSKQEYLFAKIDMQIKLIPGNSAGTVTTYYLSSQGPKHDEIDFEFLGNLSGDPYIMHTNVFAQGLGNREQQFYLWFDPTLDFHTYSVLWTSNQIIFSVDGTPVRVFKNRETELGNVDTNYHYPKNQAMRIYSTLWNADDWATRGGLVKTDWTKAPFVASFRNFNAATSSSSDSAAEE-ALDSNQE--QRLQWVRKNYMIYNYCADTKRFPQGLPPECK

SNPs (tot: 97)

Position	A %	C %	G %	T %	Probability
189		80	20		0.995493
191	20		80		0.995493
205		20		80	0.995493
209		80	20		0.995493
271	12		87		0.992554
293		12		87	0.992554
304		87		12	0.992554
470	95		4		0.996252
537	37		62		1.0
558			95	4	1.0
629	3			96	1.0
641		96	3		1.0
642			31	68	1.0
647	3		96		1.0
648	96			3	1.0
649		96		3	1.0
660	0	2		97	0.999924
661			1	98	0.961315
663	3	81	1	12	1.0
664	11	87		0	1.0
666	0	94	2	0	0.992735
669	5	93	0	0	1.0
670	95		4		1.0
673	1	1	80	13	1.0
674	18	2		75	1.0
675	3	16	3	77	1.0
677	19		76	3	1.0
678	5	65		25	1.0
679	10		60	25	1.0
680	66		5	27	1.0
681	27		72		1.0
683		35	64		1.0
685		41		58	1.0
712		25		75	0.996473
992			33	66	1.0
1136	66		33		0.997452
1142	33		66		0.997452
1145	33		66		0.997452
1151		33		66	0.997452
1217		11		88	0.923564
1235		88	11		0.923564
1247	88		11		0.923564
1297	60		40		1.0
1299		40		60	1.0
1300	60		40		1.0
1302		66	33		1.0
1303	33	50		16	1.0
1305	50		16		1.0
1306	50	33		16	1.0
1307	50		16	33	1.0
1308	66			33	1.0
1309		66	33		1.0
1310		66	33		1.0
1311		83		16	0.994512
1312	50			50	1.0
1313	50		50		1.0
1314			66	33	1.0
1316	83			16	0.994512
1317	50	33	16		1.0
1319		50	50		1.0
1321		16	66		0.988813
1322	16		83		0.994512
1343		16		83	0.994512
1384	83			16	0.999991
1386			16	83	0.999991
1387			83	16	0.999991
1391		16		83	0.999991
1392	83			16	0.999991
1393	83			16	0.999991
1394	83		16		0.999991
1399	16	83			0.999991
1402		16		83	0.999991
1403	16			83	0.999991
1410	25			75	1.0
1415		25		75	1.0
1431			25	75	1.0
1437	83		16		0.999991
1438		25		75	1.0
1440		75		25	1.0
1448		75		25	1.0
1451		25		75	1.0
1457		56	43		1.0
1472			45	54	1.0
1529	5		94		0.997984
1651		73	26		1.0
1688		72	4	22	1.0
1702	70		29		1.0
1708			31	68	1.0
1735	26			66	1.0
1740	6	26	66		1.0
1752	28		57		1.0
1753	28		71		1.0
1827		60		40	1.0
1828		40		60	1.0
1829			60	40	1.0
1830	60		40		1.0
1831	60		40		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
740	765	ATCGAC ATCGAC ATCGAC ATCGAC AT	26
1853	1866	AT AT AT AT AT AT AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain