SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15810

Length: 1986 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15810
CGTCGTGACCTTGGCTGTCACTCAGGTAAAGAGTCTTTACGCCATTGAATTTCGGGGAATTCAATACAGACGAAATGGCTGGCGTTATAGCCGCAGGAGTTGCAAATTTGAACGTTCTGGGCCGAGAAACTGCCGAGTTCACTTCGTTCAGGCCGGTATTTCTTCGAGGAAATTCTCAGGGACTCTCTTCGGCCTCTTCTTTGTGTGATTACAGAATTTTGGCGGATTCCAAGCGGAAGAAGCATGGGATTTTCAGGAAGCAGAATATTAATAGAAGCACAGTCGTTTCTCCACGGGCGGTTTCTGATACCTTCAGTGAACTGACCTGTTTAGATCCGGTCGCGAGTCGGAGTGTGCTGGGCATTATCCTAGGAGGTGGAGCTGGGACTCGTCTTTATCCGCTGACTAAGAAGAGAGCGAAACCAGCTGTTCCTTTGGGTGCCAATTATAGGCTGATCGATATCCCTGTTAGTAATTGCATAAATAGTAATATCTCTAAGATCTATGTTCTTACCCAGTTCAACTCGGCTTCTCTCAACCGTCATCTTTCACGGGCCTATGCAAGCAACATGGGCAGCTACAAGGATGAAGGATTTGTGGAAGTACTTGCCGCTCAGCAAAGCCCTGAAAATCCAAATTGGTTCCAGGGAACAGCAGATGCTGTGAGACAGTACTTGTGGCTTTTTGAGGAGCAACAAGTAATGGAATTTCTGATTCTAGCTGGAGATCATCTCTATCGTATGGATTACCAGAAATTCATTCAGGCTCACAGGGAAACCAATGCAGATATCACCGTGGCAGCTTTACCCATGGATGAGAAACGAGCAACAGCTTTTGGTCTAATGAAGATTAATGATGAAGGCCGCATCATTGAATTTTCAGAGAAACCCAAAGGAGAACAGTTGAGGGCGATGATGGTGGACACTACAATTTTAGGCCTGGATGAAGAGAGAGCCAAGGAGATGCCTTACATAGCTAGCATGGGGATTTATGTTGTTAGTAAAGATGCAATGTTGAAGCTTTTGCGTGAACAATTTCCCCAAGCAAATGATTTTGGAAGTGAAGTCATACCGGGTGCCACTTCAGTTGGAATGGCGGTACAGGCATATTTGTACGATGGATATTGGGAAGATATTGGTACCATCGAGGCTTTTTATAATGCAAATTTGGGTATTACCAAGAAGCCAATACCAGACTTCAGCTTTTATGATAGATCTGCTCCAATCTATACTCAATCTCGATTTTTGCCACCATCGAAGATGCTTGATGCAGATGTGACTGACAGTGTTATTGGCGAGGGATGTGTCATAAAGAACTGTCAAATTCGCCACTCGGTTGTTGGACTACGTTCTTGGATTTCAGAGGGTGCAATAATAGAGGATGCCTTGCTCATGGGTGCTGATTACTATGAAACTGATGAAGAGCGAAGCTTGCTTTCGAATAAAGGTGGTGTCCCAATTGGCATTGGAAAAGACTGCCATATAAAACGGGCAATAATTGACAAAAATGCTCGTGTTGGAGCCAATGTCAAGATCATCAACAAGGACAACGTGCAAGAAGCTGCGAGGGAAACAGATGGGTACTTCATAAAGAGTGGTATTGTAACCGTAATCAAAGATGCTTTAATTCCTAGTGGTACAGTCATTTAAAACCATTTGCCTGTACACAAATTGCCTCAAATAACACTACTTTTTTCCCCACCTTTAGTCGATATACCGGGAAAAGGCAGCAATTCAAATATTTCCTTAGAAGGAGATTCCTGTATTTTAGTGGAAAAATAATGTATGACGGAAGACATTGATGGTTTTTGTAATTATGTACGAAATTTTATTGGTCATTGCCTTCAATGCAACGGTCGATACTTTTATGCTCAAACGGTCTATATTTTTATGCTGTTCCGAGGCAGTGATAATTCTTTGCGCATCTTCTGGCTCGTGCAAGATAGTATTGTTAAAATTCCAAGAAGTTACTAAGTTATTGCTCATT

Ace file of the UniGene sp_v1.1_unigene15810

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glucose-1-phosphate adenylyltransferase n=2 Tax=Picea sitchensis RepID=B8LNV7_PICSI	-	-	94%
FL-Next	sp=Glucose-1-phosphate adenylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	adp-glucose pyrophosphorylase small subunit	-	-	91%

Source	ECs	Term	Type	e value	Identity
Blast2go	Glucose-1-phosphate adenylyltransferase.	EC:2.7.7.27	-	0.0	91%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	91%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	91%
Blast2go	Metabolic pathways	01100	91%

Source	GOs	Term	Type	Identity
Blast2go	glycogen biosynthetic process	GO:0005978	Biological Process	91%
Blast2go	starch biosynthetic process	GO:0019252	Biological Process	91%
Blast2go	ATP binding	GO:0005524	Molecular Function	91%
Blast2go	glucose-1-phosphate adenylyltransferase activity	GO:0008878	Molecular Function	91%
Blast2go	amyloplast	GO:0009501	Cellular Component	91%
Blast2go	chloroplast	GO:0009507	Cellular Component	91%
Blast2go	cytosol	GO:0005829	Cellular Component	91%

Source	InterPros	Term	Type	Identity
Blast2go	Nucleotidyl transferase	IPR005835	-	91%
Blast2go	ADP-glucose pyrophosphorylase, conserved site	IPR005836	-	91%
Blast2go	Trimeric LpxA-like	IPR011004	-	91%
Blast2go	Glucose-1-phosphate adenylyltransferase	IPR011831	-	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LNV7

Fln msg:

Fln protein: MAGVIAAGVANLNVLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKINDEGRIIEFSEKPKGEQLRAMMVDTTILGLDEERAKEMPYIASMGIYVVSKDAMLKLLREQFPQANDFGSEVIPGATSVGMAVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQSRFLPPSKMLDADVTDSVIGEGCVIKNCQIRHSVVGLRSWISEGAIIEDALLMGADYYETDEERSLLSNKGGVPIGIGKDCHIKRAIIDKNARVGANVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI*

Protein Length: 526

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTAAAGAGTCTTTACGCCATTGAATTTCGGGGAATTCAATACAGACGAA_-_ATGGCTGGCGTTATAGCCGCAGGAGTTGCAAATTTGAACGTTCTGGGCCGAGAAACTGCCGAGTTCACTTCGTTCAGGCCGGTATTTCTTCGAGGAAATTCTCAGGGACTCTCTTCGGCCTCTTCTTTGTGTGATTACAGAATTTTGGCGGATTCCAAGCGGAAGAAGCATGGGATTTTCAGGAAGCAGAATATTAATAGAAGCACAGTCGTTTCTCCACGGGCGGTTTCTGATACCTTCAGTGAACTGACCTGTTTAGATCCGGTCGCGAGTCGGAGTGTGCTGGGCATTATCCTAGGAGGTGGAGCTGGGACTCGTCTTTATCCGCTGACTAAGAAGAGAGCGAAACCAGCTGTTCCTTTGGGTGCCAATTATAGGCTGATCGATATCCCTGTTAGTAATTGCATAAATAGTAATATCTCTAAGATCTATGTTCTTACCCAGTTCAACTCGGCTTCTCTCAACCGTCATCTTTCACGGGCCTATGCAAGCAACATGGGCAGCTACAAGGATGAAGGATTTGTGGAAGTACTTGCCGCTCAGCAAAGCCCTGAAAATCCAAATTGGTTCCAGGGAACAGCAGATGCTGTGAGACAGTACTTGTGGCTTTTTGAGGAGCAACAAGTAATGGAATTTCTGATTCTAGCTGGAGATCATCTCTATCGTATGGATTACCAGAAATTCATTCAGGCTCACAGGGAAACCAATGCAGATATCACCGTGGCAGCTTTACCCATGGATGAGAAACGAGCAACAGCTTTTGGTCTAATGAAGATTAATGATGAAGGCCGCATCATTGAATTTTCAGAGAAACCCAAAGGAGAACAGTTGAGGGCGATGATGGTGGACACTACAATTTTAGGCCTGGATGAAGAGAGAGCCAAGGAGATGCCTTACATAGCTAGCATGGGGATTTATGTTGTTAGTAAAGATGCAATGTTGAAGCTTTTGCGTGAACAATTTCCCCAAGCAAATGATTTTGGAAGTGAAGTCATACCGGGTGCCACTTCAGTTGGAATGGCGGTACAGGCATATTTGTACGATGGATATTGGGAAGATATTGGTACCATCGAGGCTTTTTATAATGCAAATTTGGGTATTACCAAGAAGCCAATACCAGACTTCAGCTTTTATGATAGATCTGCTCCAATCTATACTCAATCTCGATTTTTGCCACCATCGAAGATGCTTGATGCAGATGTGACTGACAGTGTTATTGGCGAGGGATGTGTCATAAAGAACTGTCAAATTCGCCACTCGGTTGTTGGACTACGTTCTTGGATTTCAGAGGGTGCAATAATAGAGGATGCCTTGCTCATGGGTGCTGATTACTATGAAACTGATGAAGAGCGAAGCTTGCTTTCGAATAAAGGTGGTGTCCCAATTGGCATTGGAAAAGACTGCCATATAAAACGGGCAATAATTGACAAAAATGCTCGTGTTGGAGCCAATGTCAAGATCATCAACAAGGACAACGTGCAAGAAGCTGCGAGGGAAACAGATGGGTACTTCATAAAGAGTGGTATTGTAACCGTAATCAAAGATGCTTTAATTCCTAGTGGTACAGTCATTTAA___AACCATTTGCCTGTACACAAATTGCCTCAAATAACACTACTTTTTTCCCCACCTTTAGTCGATATACCGGGAAAAGGCAGCAATTCAAATATTTCCTTAGAAGGAGATTCCTGTATTTTAGTGGAAAAATAATGTATGACGGAAGACATTGATGGTTTTTGTAATTATGTACGAAATTTTATTGGTCATTGCCTTCAATGCAACGGTCGATACTTTTATGCTCAAACGGTCTATATTTTTATGCTGTTCCGAGGCAGTGATAATTCTTTGCGCATCTTCTGGCTCGTGCAAGATAGTATTGTTAAAATTCCAAGAAGTTACTAAGTTATTGCTCATT

Fln Alignment:

sp_v1.1_unigene15810___MAGVIAAGVANLN--VLGRETAEFTSFRPVFLRGNSQGLSSASSLCDYRILADSKRKKHGIFRKQNINRSTVVSPRAVSDTFSELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYASNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKINDEGRIIEFSEKPKGEQLRAMMVDTTILGLDEERAKEMPYIASMGIYVVSKDAMLKLLREQFPQANDFGSEVIPGATSVGMAVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQSRFLPPSKMLDADVTDSVIGEGCVIKNCQIRHSVVGLRSWISEGAIIEDALLMGADYYETDEERSLLSNKGGVPIGIGKDCHIKRAIIDKNARVGANVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI
B8LNV7_______________MAGVMATGAANLNMNILARETADFTSFRPVFLRGNSQGLSSASSLCDTRISADSKQKKPWISRKQNGNRSTVVSPRAVSDTFNELTCLDPVASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINSNISKIYVLTQFNSASLNRHLSRAYSSNMGSYKDEGFVEVLAAQQSPENPNWFQGTADAVRQYLWLFEEQQVMEFLILAGDHLYRMDYQKFIQAHRETNADITVAALPMDEKRATAFGLMKIDNEGRITEFSEKPTGEQLRAMMVDTTILGLDEERAKEMPYIASMGIYVVSKDAMMKLLREQFPHANDFGSEVIPGATSIGMAVQAYLYDGYWEDIGTIEAFYNANLGITKKPIPDFSFYDRSAPIYTQSRFLPPSKMLDADVTDSVIGEGCVIKNCQIRHSVVGLRSWISEGAIIEDALLMGADYYETDDERSLLSNKGGVPIGIGKDSHVKRAIIDKNARIGANVKIINKDNVQEAARETDGYFIKSGIVTVIKDALIPSGTVI

SNPs (tot: 3)

Position	A %	C %	T %	Probability
1690	20		79	1.0
1871	3	13	83	1.0
1985		50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain