SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15809

Length: 1475 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15809

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=14 Tax=Tracheophyta RepID=Q69JN7_ORYSJ	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ubiquitin-conjugating enzyme-like protein	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	protein deubiquitination	GO:0016579	Biological Process	96%
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	96%
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	96%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	96%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NLA0

Fln msg:

Fln protein: MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTESPYAGGVFFVMIHFPPDYPFKPPKVNFQTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKSQRSRYEETARAWTQKYAMN*

Protein Length: 150

Fln nts: ATGGGGACAGTTCTTGTCTGAGGTAAGTACTCTGTCTGACTTTGGCTATCTTTTGTTTATTTTGTCCAATAATTTTCCAGTCATATATTACCTCTCATTTTGCAACCGTGGATTTGGTGCATCTGCTGACCCATTCTCTCTTCTCCTTCGTTGTGTATCTTTCCTAATTGAATACTGGGTTGCTTGCATTTCTTTAACCGGTGGACTGTCCTTTGTATCCTGCAGTTTGTCATTATTGAGGTGTTGGGTGGGTATTGTCTTCTGCAGATTTTGAGCCTTTGGTGACCTTGTGCTGTGGTTGGTGCTCTGGTTCAGCCGATTCACCAGTAAGAC_-_ATGGCCAGCAAGCGCATTCAAAAAGAACTTCAGGACTTGCAGAGGGATCCCCCCACTTCCTGCAGTGCAGGGCCTGTGGGCGAAGATTTATTTCATTGGCAGGCAACCATAATGGGCCCAACTGAGAGCCCTTATGCCGGAGGGGTTTTCTTTGTTATGATCCACTTTCCTCCAGATTACCCCTTCAAGCCCCCGAAGGTTAATTTCCAAACCAAGGTTTATCATCCAAACATCAACTCCAATGGTAGCATCTGTTTGGATATCCTCAAGGAACAGTGGAGTCCCGCACTGACAATCTCTAAGGTCCTTTTGTCAATTTGCTCTCTTCTGACTGACCCAAATCCTGATGATCCTCTTGTTCCTGAAATTGCTCATATATACAAGAGCCAAAGGTCTCGTTATGAGGAGACAGCAAGAGCATGGACTCAAAAGTATGCCATGAATTGA___TTCCACTCTTGTCATATGAAAGCCAGGGAAGAATTTGCAGTTCATGAAAACTTGGTTTTGCCTGTATCAAGTTTGAATCTTCCTCAAGTCAGGAAGACAGGAAAATTATTGCTGATGCTATAAGATCGAGACTTATGGTGATCAATCAATCTCATATGATATAAATGAATATGGTGTCTATCTGTACATTTATAAGTGGAATTTGGTGCTTGATTCATAATTAACAATGGATTTTGGCTTGATTCAAGCAGTGAGGATTTCCTTCATTTGTTAGTTTGTTGTAAGAATATTAGTATGGTTTCTATTGCTTTAAATAATGCTATGCAATTTCTTGAGCCAAAGTCCTTTCTTAAGTGTGTTTTCCAGGTGCCATTAGATAAGCTTTATTGATACAGCCTTCTTGTGGTTTTCCTCTATTTTGCACAAAGTAGTTCCATGGTCTAAGATTAACATCTGGCTGTATGGTTGTATGTTTATGGCTCATACCTCTAATTTAATTGATCTGGTTTTGGAATTTCAGTGCCCTCTGGGATTAGGAATGTTGTAAGATATACGTGGCTAATTCACCTTGCAGCATGGTTGGATATTTATAGCTCAATGCTCAACTTTCTCTGGTCTGGTGTTTCAAGACATTTGGGTGAAGGCTCAACTAATAGGCTCCTGTTGTGGCTTCTGCTGACATTAGGGATGATTAT

Fln Alignment:

sp_v1.1_unigene15809___MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTESPYAGGVFFVMIHFPPDYPFKPPKVNFQTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKSQRSRYEETARAWTQKYAMN
A9NLA0_______________MASKRIQKELQDLQRDPPTSCSAGPVGEDLFHWQATIMGPTDSPYAGGVFFVMIHFPPDYPFKPPKVNFQTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKSQRSRYEETARAWTQKYAMN

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
274			14	85	0.993533
275			14	85	0.993533
276			14	85	0.993533
283	12			87	0.992554
437		3		83	1.0
471	76	16		6	1.0
473	76	13		10	1.0
475	20	75		3	1.0
481			20	79	1.0
484		78		21	1.0
486			75	25	1.0
487	85	7		7	0.997433
488	8	20	60	12	1.0
489	8	33	50	8	1.0
490	26	17	56		1.0
491	8		91		0.999807
493			8	91	0.999807
494	8			91	0.999807
495		8		91	0.999807
499			8	91	0.999807
501		8		91	0.999807
503	91		8		0.999807
505		8	91		0.999807
507		8		91	0.999807
508		91		8	0.999807
937	96		3		0.999999
1045	4			95	0.995482
1046	4		95		0.995482
1048	2		93	4	0.983471
1057		7		92	0.999999
1061	2	5		91	0.995208
1129	6		80		0.999961
1130	21	57		7	1.0
1131	11	77		11	0.968132
1135	33		66		0.997452
1136	33			66	0.997452
1137	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain