SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15782

Length: 1165 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15782

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Acid phosphatase 1 precursor, putative (EC:3.1.3.2)	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	acid phosphatase 1	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acid phosphatase.	EC:3.1.3.2	-	0.0	69%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Aminobenzoate degradation	00627		0.0	69%
Blast2go	Riboflavin metabolism	00740		0.0	69%

Source	GOs	Term	Type	Identity
Blast2go	acid phosphatase activity	GO:0003993	Molecular Function	69%
Blast2go	vacuole	GO:0005773	Cellular Component	69%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	69%
Blast2go	chloroplast	GO:0009507	Cellular Component	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	69%

Source	InterPros	Term	Type	Identity
Blast2go	Acid phosphatase (Class B)	IPR005519	-	69%
Blast2go	Acid phosphatase, plant	IPR010028	-	69%
Blast2go	Vegetative storage protein/acid phosphatase	IPR014403	-	69%
Blast2go	HAD-like domain	IPR023214	-	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA42

Fln msg:

Fln protein: MEAHASRYRYGLLLHIILPLLVISTESALGLPNKDLQKWDILNLRNHKISLKNYCESWRMNVELNNIRNFNVVPGECVQYIGKYMTSTQYRVDLERAVEQSLLYLNSLDLAGDGMDAWIFDVDDTLLSSVPYFKEHRFGGENIDRASLEKWMEEMKAPALEPLLLLYNEVKLRGVKIFIITGRSESLRDATVQNLVQAGYMGWTDLIMRGENENGKAYATYKSERREQVVKGGYRIIGNTGDQWNDVLGASAGYRTFKLPNTMYYSV*

Protein Length: 269

Fln nts: ATGGGCGTCGTGACCTTGGCTGTCACTCAGTTTGTTCCTCCGATGTTCTGGTTCATGTGCCACTGTGCCTCCTGAAATCATATTCTCATACAACA_-_ATGGAGGCCCATGCGAGTAGATATAGATATGGATTGTTGCTGCACATTATTCTACCGCTCCTCGTGATCAGCACAGAAAGTGCCCTGGGCTTGCCAAACAAGGACTTGCAGAAATGGGACATTCTGAATCTCAGGAATCATAAGATCAGCCTCAAGAACTACTGCGAGAGCTGGAGAATGAACGTGGAGCTCAATAATATTAGAAATTTCAATGTCGTTCCAGGAGAATGCGTTCAGTACATCGGCAAATATATGACTTCTACTCAGTACCGAGTAGATTTGGAGAGAGCTGTTGAACAGAGCTTGCTCTATCTAAACAGCTTAGATTTGGCGGGCGATGGAATGGATGCCTGGATCTTCGATGTAGATGACACCCTACTCTCCAGTGTACCCTATTTCAAAGAACACAGATTTGGGGGAGAGAATATTGATAGAGCATCGTTGGAAAAATGGATGGAGGAGATGAAGGCTCCTGCACTGGAACCATTGTTGCTTCTCTACAACGAGGTGAAACTGAGAGGGGTCAAGATCTTCATCATCACGGGCAGGAGCGAATCCTTGAGGGATGCCACAGTGCAGAATCTGGTGCAAGCTGGATATATGGGATGGACGGATCTGATTATGAGAGGGGAGAACGAGAACGGGAAAGCTTATGCGACATATAAATCGGAGAGGAGGGAGCAGGTGGTGAAGGGGGGCTATCGCATCATAGGTAACACAGGCGATCAATGGAACGATGTGCTTGGTGCTTCAGCGGGTTATCGAACCTTCAAACTCCCAAATACCATGTATTACTCTGTATGA___GTATTTATCAGAGCTCAAGCCATCGGAATCCATTTTTTTCTTCCAATTTTGGTATTTTCTCCTGGCCTTTGAATAATGGATATAATGAATAATTCCTTTATTGATATTTGAAAACAGCCCTGTATTTCTTCATTTCTGAATCAGGTCTGTATTCCGTCATTTTTAAACATGGATCTGATCAATCTGCCTCTTGGGTAGCCAGTGTCAGGTCGATCCTTTCAGCTGCATTATTATCCAGTGAGTAAAAAAAGTGTATAATTATATGT

Fln Alignment:

sp_v1.1_unigene15782___CESWRMNVELNNIRNFNVVPGECVQYIGKYM-TSTQYRVDLERAVEQSLLYLNSLDLAGDGMDAWIFDVDDTLLSSVPYFKEHRFGGENIDRASLEKWMEEMKAPALEPLLLLYNEVKLRGVKIFIITGRSESLRDATVQNLVQAGYMGWTDLIMRGENENGKAYATYKSERREQVVKGGYRIIGNTGDQWNDVLGASAGYRTFKLPNTMYY
D5AA42_______________CEGWRLSVESGNLRDWDVVPSKCVGYVQKYMMTAGQYWEDSKVAVFTILEYVKTLKLVGDGKDAWVFDIDETLLSNIPYYQQHEYGGKAFDSKTFEAWVLEMKSPALPSSLLLYNRLLARGFKIFLLTGRDESQRNGTVHNLFQAGYKGWAGLILRGVNEQGSQASAYKPEKRAELVKKGYRLWGSVGDQWSDLSGPYEASRSFKLPNPMYY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
269		5	94		0.998744
271	94			5	0.998744
274	94	5			0.998744
276			94	5	0.998744
277	94		5		0.998744
278	94		5		0.998744
283			94	5	0.998744
284	94	5			0.998744
285	5		94		0.998744
300	79	2	18		1.0
517	11		88		0.923564
985	75	25			1.0
987		12	87		0.992554
1018		71		28	1.0
1033	14		14	71	0.984337
1036		83		16	0.994512
1045			83	16	0.994512
1056			83	16	0.994512
1059	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain