SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15774

Length: 1344 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15774

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Universal stress protein (Usp) [Synechococcus sp. WH 7805] gb\|EAR17359.1\| Universal stress protein (Usp) [Synechococcus sp. WH 7805]	-	-	6.0e-05	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	78%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	UspA	IPR006016	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADG4

Fln msg:

Fln protein: MAMAMAIAQSAVGVHAMNARIMYHLAPLVKAPLMDLFTIHPNSPSRKSLNSFSSRRMGSTIVKRTPPKARAEVQASGDGTAAAYLTQFKHVLLPITDGNPYLTEGTRQAVATTTALAKKYGADITVVVIDENSRDAIADHDTRLSSIRWHLAQGGFEEFSLMERLGEGKKPTAVIGEVADDLNLDLVVITMESIHSKYVDGNLLAEFIPCPVLLLPL*

Protein Length: 219

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGATCCATTGTGTTTTTAAAATCTTGCAGTTGCAACTCTCGTCCATTCTCTTGACCGTGATCTTTGTTTGGTTTTTCAGTGGATTATACAATTTCTGC_-_ATGGCAATGGCAATGGCAATTGCACAGTCCGCAGTGGGGGTACACGCCATGAATGCGAGAATAATGTATCATTTGGCACCCCTTGTTAAAGCTCCTCTCATGGATTTGTTCACAATTCACCCAAATTCCCCTTCCCGCAAAAGCTTAAATTCCTTCTCTTCAAGGAGAATGGGCAGCACAATAGTAAAGCGGACGCCTCCTAAAGCAAGAGCAGAGGTGCAAGCATCTGGGGATGGTACAGCTGCAGCATACTTAACACAGTTTAAGCATGTACTTTTGCCCATTACTGATGGCAACCCATACCTTACAGAGGGTACAAGACAGGCTGTCGCAACAACTACAGCATTGGCAAAGAAATATGGTGCGGACATCACTGTTGTTGTTATTGATGAAAATAGCAGGGATGCAATAGCAGATCATGACACACGATTATCCAGTATTCGCTGGCATCTGGCTCAAGGTGGTTTTGAGGAGTTTAGCTTGATGGAGAGGCTCGGTGAAGGCAAGAAGCCTACTGCTGTTATTGGAGAGGTCGCTGATGACTTGAATCTTGATTTGGTAGTGATTACTATGGAATCCATTCACTCAAAATATGTTGATGGGAATTTGCTGGCAGAGTTCATTCCCTGCCCCGTTCTTTTGCTGCCACTGTAG___TTTGAGTTTGCGCGGTTGATTACACTGATTTAAAATTGCTTATTATGAAGAACAGCTTACAAGTGGCATCGTTTTTTGTTAAGCTTGTTTTGGATAGGTGCGTATTTTCCAATAACATCTTGTCCAAGAAAGGATACGCAAAAGAGTTGAGGAATGCAAGGGGTTATCCTGAACTACAGAGATCTTGTACAATTCGTTTGCGTTGCAGAACCAAGGTTTCATGTAGAGAGAGATCTCATATGCTTTTAAAAGTGATTCTTCTGGTGTCAAAAGTGTCAGGTGTTATTTTTCCACCCTGGCCTTTTTGTAAGATGAAGACAATAAGGGCAGTAGAAGTAGACTATGTCCTCACTGCTTTCTCTCATGGCCATGACTTTCTTTGTCAATATACTAGCTCATTGGACTTATGTCAGATCACGTAATGGCATTTCAATCTAACACCCATTAGTCTGAGACCCTGACCAAAGATATTGAGGCTAATAAATGGATTTTCAAGCAACCTTCGACACCACTAAAAGACTTTAGAGCAAGCATCTAGTTATCTTACACTGTCAATAAAGAGCATAATTT

Fln Alignment:

sp_v1.1_unigene15774___MAIAQSAVGVHAMNARIMYHLAPLVKAPLMDLFTIHPNSPSRKSLNSFSSRRMGSTIVKRTPPKARAEVQASGDGTAAAYLTQFKHVLLPITDGNPYLTEGTRQAVATTTALAKKYGADITVVVIDENSRDAIADHDTRLSSIRWHLAQGGFEEFSLMERLGEGKKPTAVIGEVADDLNLDLVVITMESIHSKYVDGNLLAEFIPCPVLLLPL
D5ADG4_______________MAIAQSAVGVHATNARLIFHVAPVLKVPLVDLFTIHPNTPSRRISHSFSSKRMVNTVVKRAALKARAEVQASGDGTAAAYLSQLKHVLLPITDSNPYLTEGTRQAVATTTALAKKYGADITVVVIDENSKDAIADHDARLSSIRWHLAQGGFEEFGLMERLGEGKKPTAVIGEVADDLNLDLVVLSMESIHSKLVDGNLLAEFIPCPVLLLPL

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
417		88		11	0.923564
618		77		22	0.999999
738	72		18		0.999994
739			72	18	0.999994
740	81	18			0.999994
743	18	9		72	0.999994
745	81	18			0.999994
748		81	18		0.999994
749		81	18		0.999994
753		90		10	0.90298
755		88		11	0.923564
756	11	88			0.923564
758	11			88	0.923564
813	11			88	0.923564
831	90		10		0.90298
832			90	10	0.90298
835			10	90	0.90298
839	90	10			0.90298
840			90	10	0.90298
845	90		10		0.90298
847		90		10	0.90298
849	11			88	0.923564
850		11		88	0.923564
852		11		88	0.923564
853	11			88	0.923564
1148		80		20	0.995493
1282		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
121	140	ATGGCA ATGGCA ATGGCA AT	20

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain