SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15772

Length: 1051 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15772 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Alpha-soluble NSF attachment protein n=2 Tax=Elaeis guineensis RepID=B3TM19_ELAGV	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	alpha-soluble nsf attachment protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	intracellular protein transport	GO:0006886	Biological Process	86%
Blast2go	soluble NSF attachment protein activity	GO:0005483	Molecular Function	86%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	86%
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	NSF attachment protein	IPR000744	-	86%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	86%
Blast2go	Tetratricopeptide repeat-containing domain	IPR013026	-	86%
Blast2go	Tetratricopeptide repeat	IPR019734	-	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRJ7

Fln msg: your sequence is shorter than subject: 203 - 289

Fln protein: SEEAITCLNLAVNLFMEIGRLSMAAKHYKEIGEIYENGQDVEKAMEFFERAADVFQGEEVTSTANQCRLKVAQFAAQLELYPKAIELFESVARESINNNLLKYHVKGYLLNAGLCQLCRGDPVALDNALEKYQELDPTFPDTRESKFLSDLAVSLEEEDVDKFTDVVKEFDSLTRLDQWKTTLLLRVKNSLKSKELEEDDLT*

Protein Length: 204

Fln nts: TCTGAAGAGGCTATAACATGCTTAAATTTGGCTGTTAATCTCTTCATGGAAATTGGAAGATTGTCGATGGCTGCAAAACATTATAAGGAGATAGGTGAGATCTATGAGAATGGACAAGATGTTGAAAAGGCTATGGAGTTCTTTGAGCGAGCAGCTGACGTTTTCCAGGGTGAAGAAGTTACAAGCACAGCTAATCAATGCCGACTTAAGGTTGCGCAGTTTGCAGCTCAACTTGAATTATATCCCAAGGCCATAGAACTTTTTGAATCTGTAGCAAGAGAATCCATCAACAACAATCTTCTGAAGTACCATGTCAAGGGATATCTCCTCAATGCCGGTCTTTGCCAGCTTTGCAGAGGGGACCCAGTGGCACTGGACAATGCATTGGAAAAATATCAGGAACTTGATCCGACGTTTCCAGACACACGAGAGAGCAAATTCCTATCTGATTTAGCGGTCTCTCTTGAGGAAGAAGATGTGGATAAATTTACTGATGTGGTGAAAGAGTTTGATAGCCTGACTCGACTGGATCAATGGAAAACAACTCTGTTGCTGCGGGTAAAGAATTCTTTGAAGTCCAAGGAGCTTGAAGAGGATGACCTTACCTGA___AAAATTATTTTGGGATGTTGCAGTATAGATGATTTCTGGGGCATCCATGTGGTCGAATAATGTGGTCATTATTCGACGGACAGCGTGTTCAAGATTCTCTACTAGTAGCTTTCTGAATCTACTAATGTGATTTTAGTTGTTTTCCTTCCTGTCTGAATCTACTAATGTTTATGAGCTTTGTAATGGCTTGCAACTGCAGCTATCATGTATGGTTGGTTTTATATTGAGGTGTTTTTCTCTTTGAACTTGATCTAATAATTATTTTTGTCCGGGGAGAATATGCATTCCTAATTCCGTGTTATCAAATCCACTTTGATGTGGGTAGTCTTCAATTTCCAATTAACTTATCAAAATGATTATTTCGAGATACCTAGTTCTTTCTGATTCGTTCAAACAAATATTCTTTAGTCGCTCTAAATTACTTTTAGGAAGGTGCTCGACT

Fln Alignment:

sp_v1.1_unigene15772___SEEAITCLNLAVNLFMEIGRLSMAAKHYKEIGEIYENGQDVEKAMEFFERAADVFQGEEVTSTANQCRLKVAQFAAQLELYPKAIELFESVARESINNNLLKYHVKGYLLNAGLCQLCRGDPVALDNALEKYQELDPTFPDTRESKFLSDLAVSLEEEDVDKFTDVVKEFDSLTRLDQWKTTLLLRVKNSLKSKELEEDDLT
A9NRJ7_______________AQEAITCLNLAVNLLMEIGRLSTAAKHYKEIGEIYENKQDAEKAMEFFERAADLFQGEEVTSTANQCRLKVAHFAAQLELYPKAIEIFESVARESINNNLLKYHVKGYLLNAGLCQICRGDPVALNNALEKYQELDPTFSDTRESKFLSDLAVSLDEEDVDKFTDVVKEFDSLTRLDQWKTTLLLQAKNSLKSKELEEDDLT

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
337	87		12		0.992554
559		91	8		0.999807
563	91		8		0.999807
566			8	91	0.999807
567		8	4	86	0.999539
568	4	8		86	0.999539
570	8		4	86	0.999539
571		82	13	4	1.0
572		82	13		1.0
573	91			8	0.999807
576			8	82	0.999136
578	4		8	78	0.998672
579	8		4	78	0.998672
581	8		13	78	1.0
582	14			85	1.0
583		90	9		0.999872
584	4	85	9		0.999726
588	90	9			0.999872
596	3	73	3	20	1.0
599		7		92	0.999532
613	91		8		0.999766
615			8	91	0.999766
617	41		58		1.0
619	8			91	0.999766
620		91	8		0.999766
625	8		91		0.999766
626	8			91	0.999766
632	8			91	0.999766
633		8	91		0.999766
636	90	9			0.999842
637	90		9		0.999842
638		60		40	1.0
641		61		38	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain