SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15769

Length: 1507 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15769

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline-rich protein n=1 Tax=Pinus taeda RepID=Q9LLZ6_PINTA	-	-	2.0e-24	67%
FL-Next	tr=Proline-rich protein; Pinus taeda (Loblolly pine).	-	-	0.0	79%
Blast2go	proline-rich cell wall protein	-	-	3.673e-24	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid transport	GO:0006869	Biological Process	3.673e-24	86%
Blast2go	lipid binding	GO:0008289	Molecular Function	3.673e-24	86%
Blast2go	endomembrane system	GO:0012505	Cellular Component	3.673e-24	86%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	3.673e-24	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor	IPR003612	-	3.673e-24	86%
Blast2go	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	3.673e-24	86%
Blast2go	Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain	IPR016140	-	3.673e-24	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9LLZ6

Fln msg: your sequence is longer than subject: 232 - 139

Fln protein: MTKARAFAFIFMVLVSVMPSSIACGYCPPPSHGSGQHPPKGSGGHHGGGSSPPKTPKTPKPPAGHVPTPTVPAPKTPKPPVVIPPPKGGSGGYPPYTPKPPSGGSPKVPTPSVPTPTIPTPSVPTPTIPTPSVPTPTVPSPSNPKCPKDALKLGACVDLLGGLVHVIIGDPVVNECCPVIQGLAGLEAALCLCTTIRAKVLNLNVYLPLALQLIASCGLTPPEGFKCPEAS*

Protein Length: 233

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCAGAATCCCCTTCACATTTGCCCACCTCCATTTTGTTCCCTTCCCTGTTTTTCTTTTTTGGGCCTCTGCTCGCCCCGCCGGACTCGTTGAATCCGAG_-_ATGACGAAAGCGCGAGCATTTGCGTTCATCTTCATGGTCCTCGTATCAGTGATGCCCTCCAGCATTGCCTGCGGTTACTGCCCACCACCGTCTCACGGCTCAGGGCAACACCCGCCGAAGGGCAGCGGCGGTCACCATGGCGGAGGATCTTCTCCGCCCAAAACGCCCAAAACGCCCAAACCTCCAGCCGGGCACGTACCCACCCCAACCGTCCCAGCGCCCAAAACGCCCAAGCCTCCAGTGGTCATCCCTCCCCCCAAAGGTGGATCAGGTGGCTACCCGCCCTACACTCCCAAACCTCCCTCCGGTGGAAGCCCCAAGGTCCCCACGCCCTCTGTTCCCACCCCTACTATCCCCACACCCTCTGTTCCCACCCCTACTATCCCCACACCCTCTGTTCCTACCCCAACTGTTCCCAGTCCTTCCAACCCGAAATGCCCCAAGGATGCTCTGAAGCTGGGAGCCTGCGTCGATCTCCTGGGAGGCCTGGTCCATGTAATTATCGGTGACCCCGTTGTAAACGAATGCTGCCCCGTTATTCAAGGCCTCGCAGGACTCGAGGCAGCGCTCTGCCTGTGTACCACTATACGAGCAAAGGTTCTGAATCTCAACGTCTATCTTCCACTAGCGCTTCAGCTTATTGCCAGCTGTGGATTGACTCCTCCAGAGGGCTTCAAGTGCCCGGAGGCCTCATAG___GTGGAGGATTGACATGTAACGGCAGTAGTACCCAGCTTGCAGATATTCAGTCAGCAACGACACTAAGGATGTCTACCTGAGTTTGGCGTTGTAGGTTTAGGGTTTTATGGAGCATCTTCTTGGCTCTTAATAAGTGTGACACTGGTTTATTGTATTCGTCATTATTAGTCGATATTTTCTGTGTGCTGTAACGTGTGATAATTTGTCTAGGTAGACATCATAATGTTCTGAATGTTTCAGGAACTTGAGCTGTTTTAATTCCATCTGCTTGACAATGGTGAGTTCCACAGCTCTTAATTCAGAAGTTGATGATGGACCCGCAGTGATCTTGGGAAACTATCAGCAGCAGGATTTTTATATACTGTACGACAGAGAGAAAAACCGTTTAGGCTTCACTCAACAGACTTGCAAGACATTCCACTGAATCATGGGGACATATTATGTTCATAGTTTATCATAATGTGTGATGTATTTCCAATAAAGTAGTAGAAGGAAGATCGTGATATCTACTGTAGACTCTCAATTTTAACTCTCCTGTCATCCTATCCGTGATCCATAGGACTCATTGCCTAAGCAACTGATGTTGATTGATTGGCATTGAAGATTTGTAGTTGTTATGGTTCCATATTTAAATATTTAAGTATATGCATTTCTCTTTGCCTTAGCGG

Fln Alignment:

sp_v1.1_unigene15769___KCPKDALKLGACVDLLGGLVHVIIGDPVVNECCPVIQXXXXXXXXXXXXTTIRAKVLNLNVYLPLALQLIASCGLTPPEGFKCP
Q9LLZ6_______________KCPLNALKLGACVDLLQGLVHVGLGDPVVNQCCPLIQGVAALEAALCLCTTIRAKVLSLNVLLPIALSLVASCGLTVPPDFKCP

SNPs (tot: 43)

Position	A %	C %	G %	T %	Probability
313		87		12	0.992554
626	3		61	30	1.0
627		7	88	3	0.999079
629	65	23	3	7	1.0
630			76	23	1.0
632		76		23	1.0
635	16		83		1.0
636		13	86		1.0
1023		3	96		0.999865
1024	3			96	0.999865
1025	3		96		0.999865
1028	3	96			0.999865
1029	3			96	0.999865
1030	3		96		0.999865
1032	96	3			0.999865
1034	3	96			0.999865
1036	3			96	0.999865
1038		3		96	0.999865
1039		3	96		0.999865
1042	96	3			0.999882
1046		2		97	0.933298
1047	2		97		0.933298
1102	20			40	1.0
1103		20		40	1.0
1104		20		40	1.0
1105	60			40	1.0
1107		60		40	1.0
1109			33	66	1.0
1113		33	66		1.0
1115	33	66			1.0
1116	33			66	1.0
1118	33			66	1.0
1119	33		66		1.0
1120			33	66	1.0
1121		33		66	1.0
1122	33		66		1.0
1125	33			66	1.0
1126			33	66	1.0
1130		33		66	1.0
1131	33	66			1.0
1132	33		66		1.0
1133		33		66	1.0
1391		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain