SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15764

Length: 2243 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15764
CGTCGTGACCTTGGCTGTCACTCAGCAGTGGAAGAAAGTTGGCTCGGAACCGAGAGAGAGATTGTGTTAGCTTACAATGGCTGTGCAAAAGGAGACAACCAATGACAGTTTGAGCTCTTTGCTTTGCAACGGGGAACGTGATTTCTTGATCAGAAATAATGGAGACAAGGTGAAAGTTGAAGAACTGGAAGGGAAACAAGTGGGTCTGTACTTTTCTGCCCATTGGTGTCCTCCATGCAAGGCTTTCACCCCCGTTTTGTCTGAAATCTATAAAAAGTTATCGGAGAAGGGGGACTTCGAGATTCTCTTCGTTTCTGCGGATTTTGATGAGAAGTCATTCGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGATAATACAAGGAAGAAGCTTAATGAGGCCTTCCAGGTCGATGGCATTCCGTGCCTTGTTTTTCTGGACAGAGAGGGCAGAGTTATAACGACTGAAGGTGTGGAGATCATTGAAGAATATGGGGTTGAGGGATATCCATTCACCGCAGAGAGATTTGATGAGCTGAGGGCGAAAGATGAAGCCTTAAGGGCTGCACAGACCGTAGAGTCTCTTCTGGTGTCTGATGAACGAGATTTTGTCCTTGCCCATGGAGGAAGAAAGGTTCCAGTAGCAGAGCTTGTGGGGAAAACTGTGTGTTTGTATTTCTCAGCCCACTGGTGCGGTCCCTGTAGAAATTTACACTCCACAGCTTGTTGGAGATTTATAATGAGCTTTTGAACAAAGGGGAGGCTTTTGAGATTGTGTTTCTCTCGAGTGACATCGAGGCGAAAGACTTTGAAGAATATTATGCAAACATGCCATGGCTGGCTTTGCCATTTGGAGACAACACTAAAAAGAATTTGTCCCGCTACTTCCGCGTTCAGGGTATCCCGACCTTGATTATTTTAGGTCCAGATGGGAAAACAGTACAGACAAATGCTGTGGGCCTTATACGAGAATATGGAATCAGAGCTTATCCATTTACCAACAAAAGGCTGGATGAGCTTGAAGCAGAGGATGAAGCCAAACGGGAAGCTCAAACCCTGGAGTCACTCTTGGTTTCCGATAAGCGCAACTTTGTGATTAAGCATGGAGGTGCCCAGGTCCCGGTAGCTGAGCTTGGGGAGAAGACAATTGCTTTGTATTTCTCTGCCCATTGGTGCCCACCTTGCCAAGCCTTCACACCAAAGCTTGTAAAGGTATACAACGAACTCAAGGAAAGAGGAAAAGACTTTGAGATTGTTTTCATCTCTAGTGACACGGATGAAGAGGCTTTTGAAGATTACTACAAAAGCATGCCATGGTTAGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCATGCGGCTTCTCCGTGTTATAGGCATCCCATCGTTGATTGTGGTGGGACCAGATGGAAAAACTGTGAACAGATGATGGCGTAAGTGCAGTGGCCACATTTGGAGTCAATGCTTATCCCTTCACTGACGCTCATCTGGAAACGCTGCAGAAGCAAAAGGAGAAGGAAATGAAAGAGTTGGCTGAGAAAACACCCAAGGAGATAAGGTACAGCCAGCATGAACATCCCCTTGTATTGACAGAGAGGCATTCATTTATCTGTGATGGTTGCGACGAAGAGGGCACTACATGGTCCTATTATTGTGAAGATTGTGACTACGATGTTCATCTGACTTGTGCGTTGAAGGATGAAGGGGATCTGAAGCAGGAGGACAAGGCTCAAGACACAGATGTTGTGATTGATGAAAACTGCAAACCTGAAGGAGTTATCTGCGATGGAGATGTTTGTTACAAGTCTGAAGCCTGATGATGATAAGGGCTGAAGCCTCATTAAATTTGATATGCTTCAAGGTCTTCGATTTTGTGTCTGAGAACGCCTGGTTATCTTTGGATAAATCGATAGATAACTGAACTTTGTTGAGTGAATGTCGCCCCATAGTGTCAGTAAATAAATTGAGTATTTCAGAGTCTATGGTTTGGATTCTACCATGGCAGTTCATTATGTAGTCGAGTTGACTCCCATTAGTATATAGCTGTGAAGTTTACCTGCACGTAGTATAGTACATAGTTGTGAAGTTTCAACTGTTCCCTTCTCTTCAATGGTCATGTTAGTTTGTAACTAAGACTTTCAAGAATATATAGTTACTCAGTCGAGTTGACTTTCGAGAATATATAGTTGTTGAGCTTGCTTTCACATGTGGATATTATTAAATCCT

Ace file of the UniGene sp_v1.1_unigene15764

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AhpC-TSA multi-domain protein	-	-	1.0e-10	23%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	dc1 domain-containing protein	-	-	0.0	74%

Source	GOs	Term	Type	Identity
Blast2go	cell redox homeostasis	GO:0045454	Biological Process	74%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	74%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	74%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	74%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	74%
Blast2go	antioxidant activity	GO:0016209	Molecular Function	74%

Source	InterPros	Term	Type	Identity
Blast2go	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	74%
Blast2go	Thioredoxin fold	IPR012335	-	74%
Blast2go	Thioredoxin-like fold	IPR012336	-	74%
Blast2go	Thioredoxin-like	IPR017936	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NXQ2

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 475 - 587

Fln protein: MAVQKETTNDSLSSLLCNGERDFLIRNNGDKVKVEELEGKQVGLYFSAHWCPPCKAFTPVLSEIYKKLSEKGDFEILFVSADFDEKSFEEYHHTMPWLALPFSDDNTRKKLNEAFQVDGIPCLVFLDREGRVITTEGVEIIEEYGVEGYPFTAERFDELRAKDEALRAAQTVESLLVSDERDFVLAHGGRKVPVAELVGKTVCLYFSAHWCGPCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKREAQTLESLLVSDKRNFVIKHGGAQVPVAELGEKTIALYFSAHWCPPCQAFTPKLVKVYNELKERGKDFEIVFISSDTDEEAFEDYYKSMPWLALPFGDKTKKDLMRLLRVIGIPSLIVVGPDGKTVNR*WRKCSGHIWSQCLSLH*

Protein Length: 476

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCAGTGGAAGAAAGTTGGCTCGGAACCGAGAGAGAGATTGTGTTAGCTTACA_-_ATGGCTGTGCAAAAGGAGACAACCAATGACAGTTTGAGCTCTTTGCTTTGCAACGGGGAACGTGATTTCTTGATCAGAAATAATGGAGACAAGGTGAAAGTTGAAGAACTGGAAGGGAAACAAGTGGGTCTGTACTTTTCTGCCCATTGGTGTCCTCCATGCAAGGCTTTCACCCCCGTTTTGTCTGAAATCTATAAAAAGTTATCGGAGAAGGGGGACTTCGAGATTCTCTTCGTTTCTGCGGATTTTGATGAGAAGTCATTCGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGATAATACAAGGAAGAAGCTTAATGAGGCCTTCCAGGTCGATGGCATTCCGTGCCTTGTTTTTCTGGACAGAGAGGGCAGAGTTATAACGACTGAAGGTGTGGAGATCATTGAAGAATATGGGGTTGAGGGATATCCATTCACCGCAGAGAGATTTGATGAGCTGAGGGCGAAAGATGAAGCCTTAAGGGCTGCACAGACCGTAGAGTCTCTTCTGGTGTCTGATGAACGAGATTTTGTCCTTGCCCATGGAGGAAGAAAGGTTCCAGTAGCAGAGCTTGTGGGGAAAACTGTGTGTTTGTATTTCTCAGCCCACTGGTGCGGTCCCTGTAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAGCCAAACGGGAAGCTCAAACCCTGGAGTCACTCTTGGTTTCCGATAAGCGCAACTTTGTGATTAAGCATGGAGGTGCCCAGGTCCCGGTAGCTGAGCTTGGGGAGAAGACAATTGCTTTGTATTTCTCTGCCCATTGGTGCCCACCTTGCCAAGCCTTCACACCAAAGCTTGTAAAGGTATACAACGAACTCAAGGAAAGAGGAAAAGACTTTGAGATTGTTTTCATCTCTAGTGACACGGATGAAGAGGCTTTTGAAGATTACTACAAAAGCATGCCATGGTTAGCTCTTCCATTTGGAGATAAAACTAAGAAGGATCTCATGCGGCTTCTCCGTGTTATAGGCATCCCATCGTTGATTGTGGTGGGACCAGATGGAAAAACTGTGAACAGATGATGGCGTAAGTGCAGTGGCCACATTTGGAGTCAATGCTTATCCCTTCACTGACGCTCATCTGGAAACGCTGCAGAAGCAAAAGGAGAAGGAAATGAAAGAGTTGGCTGAGAAAACACCCAAGGAGATAAGGTACAGCCAGCATGAACATCCCCTTGTATTGACAGAGAGGCATTCATTTATCTGTGATGGTTGCGACGAAGAGGGCACTACATGGTCCTATTATTGTGAAGATTGTGACTACGATGTTCATCTGACTTGTGCGTTGAAGGATGAAGGGGATCTGAAGCAGGAGGACAAGGCTCAAGACACAGATGTTGTGATTGATGAAAACTGCAAACCTGAAGGAGTTATCTGCGATGGAGATGTTTGTTACAAGTCTGAAGCCTGATGATGATAAGGGCTGAAGCCTCATTAAATTTGATATGCTTCAAGGTCTTCGATTTTGTGTCTGAGAACGCCTGGTTATCTTTGGATAAATCGATAGATAACTGAACTTTGTTGAGTGAATGTCGCCCCATAGTGTCAGTAAATAAATTGAGTATTTCAGAGTCTATGGTTTGGATTCTACCATGGCAGTTCATTATGTAGTCGAGTTGACTCCCATTAGTATATAGCTGTGAAGTTTACCTGCACGTAGTATAGTACATAGTTGTGAAGTTTCAACTGTTCCCTTCTCTTCAATGGTCATGTTAGTTTGTAACTAAGACTTTCAAGAATATATAGTTACTCAGTCGAGTTGACTTTCGAGAATATATAGTTGTTGAGCTTGCTTTCACATGTGGATATTATTAAATCCT

Fln Alignment:

sp_v1.1_unigene15764___RERLC*LTMAVQKETTNDSLSSLLCNGERDFLIRNNGDKVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
A9NXQ2_______________KERLDDLEAEEKAKREAQTLESVLVSDERNFVIKHGGAQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
515		75		25	0.996473
529		25		75	0.996473
566			75	25	0.996473
590		25		75	0.996473
638	75			25	0.996473
687		25		75	0.996473
878	33		66		1.0
881	20		80		0.995493
966	83			16	0.994512
1124	10		85		0.999793
1135		84	15		1.0
1150			11	88	0.999937
1152			82	17	1.0
1183		80		20	1.0
1290		62	37		1.0
1963	10	79			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain