SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15733

Length: 1657 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15733

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	B-cell receptor-associated protein 31-like containing protein n=4 Tax=Andropogoneae RepID=B6U1I6_MAIZE	-	-	8.00141e-43	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	b-cell receptor-associated protein 31-like containing protein	-	-	0.0	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	66%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Blast2go	B-cell receptor-associated 31-like	IPR008417	-	0.0	66%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8P4

Fln msg:

Fln protein: MIQLLSTLVIAEGIVALLLMINIPPFRKLLMKALDRTKMNSGPAMVRTLAGAMVVILASSLTSIMKIHARTMQLGAVTPTDQILLKTHMLEASLMGYALFLGLVIHRLHHFLRKIRGLKATVDTLKMQAGGAQVSPKDEKEQTNSKATKLLKGEIAGLRQKLQKLTLDCEMMENETKSAEANAKSLQKQAEGFLMEYDRLLEDNQNLQNQLSALDKTSSKLDNKKDA*

Protein Length: 229

Fln nts: CGTCGTGACCTTGGCTGTCACTAAAAATTCAGGCTCATGTTCTAAATCTAGCGTCGTGACCTTGGCTGTCATGTTGTTGCCCAGTTGACCCCTATCGCGGAGGCGTTAGCGCTCGAGGATTTTGGGGGTTTTCGACGCTGATGGATTTACTCACCCACGAAAATTTCAGGGCCAAGTGGTTGTTCACTTTAGTTACTAAATAAAAATGAAGAAAACCGTGCAAAAATAGATGCGGTGGCCTCAAAGACAAGCATAAGAGTCGGTCGGTAGCCACCATGAATGCACGAAAGGTAGAATAAAGAGTAGCCATTACTTCCGTAAGCCTCAGAGGCGCAACGAATCTCTAATTTGGTCCGAAGCGTCTGTATTCTCTGTGTGTTTGGAATTCATTCAGACAACAAGATTTACGAATTGATCACCATTTTAATTCAATTCAAGAAGCGGAATCTGTGATCCAAG_-_ATGATCCAACTATTGTCCACTCTGGTGATAGCAGAGGGCATAGTTGCATTGCTTTTGATGATAAACATACCCCCATTTAGAAAATTACTGATGAAGGCCCTTGATAGGACCAAGATGAACAGTGGCCCTGCCATGGTTAGAACTCTTGCAGGTGCAATGGTTGTCATTCTGGCGTCCAGCCTTACCAGTATTATGAAAATACACGCACGGACAATGCAGCTGGGTGCAGTAACTCCAACTGACCAGATTCTTTTGAAAACCCATATGCTGGAGGCTTCTTTGATGGGATATGCTCTCTTTCTTGGATTGGTCATTCATCGTCTGCACCACTTTCTTCGAAAGATACGTGGCCTTAAAGCTACCGTAGATACATTAAAAATGCAGGCCGGAGGTGCTCAGGTATCCCCCAAGGACGAAAAAGAACAAACTAATTCCAAGGCGACAAAACTGTTGAAGGGTGAGATAGCTGGGCTGAGACAAAAGTTACAAAAGTTGACTTTAGATTGTGAGATGATGGAAAATGAGACCAAGTCGGCTGAAGCAAATGCCAAATCTCTTCAGAAGCAAGCTGAGGGATTTCTGATGGAGTATGATCGTCTTTTGGAGGACAATCAAAATCTTCAAAACCAGTTATCAGCATTGGATAAAACGTCTTCAAAATTAGATAACAAAAAAGATGCATAA___GATTCTCATTTGCCAATGTATTTATATCAAAACTTCAAGTGCTCTTAATGACTGGATAGGCTGCATGAGTGATATTTACAGCGCCTCATGAAATAGGTCCAGGCAACGTTCAAACCAAGTCCATGGTCAACCTACAAACTGCTTAATTTACTTTATATTTAAGGTTCATCTTCGCCATGTGACTGGAGATAGCCCTCTAACAAGAGTTATATTGCTAGGTTTTGAATGACTAATTTTGGTGCACCGAAGGCAGAGGGTCTTCCTTAACCAAAGCCATTTCAAAATTAAAATAGTTTTTCGTTTTCAGCTGTATACCTCCTACACAAAAGTTTTGCTATAACGTAATTGCATGGTAAGATGTGGAGTATTGTGTTTTACATGTCAGGGGTATGAACTAGAAGTCTTTCAACTGTATTTTGAAAGTTTATTTGTCAATGACCCTTTCATTTATGCCATCTTAGGGGTGTTAATTTGATAGAGAATTGCTAATGTATCAAGAAACTTTTTAAATTTT

Fln Alignment:

sp_v1.1_unigene15733___MIQLLSTLVIAEGIVALLLMINIPPFRKLLMKALDRTKMNSGPAMVRTLAGAMVVILASSLTSIMKIHARTMQLGAVTPTDQILLKTHMLEASLMGYALFLGLVIHRLHHFLRKIRGLKATVDTLKMQAGGAQ---VSPKDEKEQTNSKATKLLKGEIAGLRQKLQKLTLDCEMMENETKSAEANAKSLQKQAEGFLMEYDRXXXXXXXXXXXXSALDKTSSKLDNKKD
D5A8P4_______________MIQLLFTLVFAQGALALFLMANIPPLRKLIIKILDQTKTGKGSAIVKTLGGTMLVILASSITSILKIQTRSVKMGTIAPTDQILMRTHLLEASLMGFALFLAIIIDRLHHYIRELSGLRMNMESLRKQAKSSQEEYFRLKEEKEGSNEMT--LLKDEIADLKQKLQKLTLESKEKEREAEVAESNALALRKQSEGFLLEYDRLLEDNQNLRSQLATFDRKFSRSDSKKN

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
443	2		93		0.979066
445			93	6	0.999999
446		6	93		0.999999
539		3		90	0.997544
1174	94			5	0.998578
1225	23	2			1.0
1481		87		12	0.992554
1648	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain