SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15727

Length: 1917 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15727 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PCI domain containing protein	-	-	7.0e-13	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	cop9 complex subunit	-	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ92

Fln msg: your sequence is longer than subject: 476 - 411

Fln protein: MRQSSPTPAFGILVSRGNSVMLQATLSSSLKIRRHILSSRLLFHLRLADLDEELLPHRNSWFCRMATLVETSDEDATLAVARFIADMAWANAGPEVAETEVIHYVDEAQAYMVEGRWSDVVSLLLTTADLIFANSAEKDLECIFTVICNLVTKAERPDEALAMADQIVTKVTQQPSDKPALRLKVLFNLYNVLENPYSKFLVYKRALKLASNGNVTDLIIPSFKKMDTFLKEWNITKNDQRELFLAISIILKDNKGSAKDSYSFLLKYLATFNGEDAYTISEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVGQLERDGKYALVYRLLRIFLTQRLDSYLEFQAANSALLKSYGLIHEDCITKMRLMSLADLASKGSGEISYASVRDTLRVTDDEVEFWIVRAISAKIIDCKMDQMRQVAVINRSTERIFGPPQWKELHSRLSIWKENVANLSKNIQKANAAADLMPEALQGVAVQ*

Protein Length: 477

Fln nts: ATACCTGACATCTAGAGAGCGTTCCGTCGGATATACAGGACGTTTGTAATTGCCTCAGGCTTCTGTGGTTGTTTAAAAGGAAATTCTGCTTAAACAAA_-_ATGCGACAGAGTTCACCCACTCCTGCTTTTGGGATTTTAGTTTCACGCGGTAACTCTGTTATGCTACAGGCGACTCTATCCTCCTCGCTCAAAATCAGGCGACATATTTTATCGAGCAGGTTGTTATTCCATCTGAGACTTGCAGACTTGGACGAGGAGCTTTTACCGCATCGAAACAGTTGGTTTTGTAGGATGGCAACACTTGTGGAGACTTCGGATGAGGATGCTACTCTTGCTGTGGCTCGTTTCATTGCAGACATGGCGTGGGCTAATGCAGGGCCTGAAGTTGCAGAAACTGAAGTGATACATTACGTTGACGAAGCCCAAGCCTATATGGTGGAAGGAAGATGGTCAGATGTGGTATCTCTTTTACTCACTACGGCTGACCTCATTTTTGCAAACTCAGCTGAAAAAGATCTTGAGTGTATTTTTACTGTCATATGTAACCTCGTGACTAAAGCGGAACGTCCGGATGAAGCTTTGGCCATGGCAGATCAGATAGTAACAAAAGTCACTCAGCAACCCAGTGACAAACCTGCTTTGCGCTTGAAAGTACTCTTCAATCTATACAATGTGCTTGAGAATCCATATAGCAAATTCTTGGTTTACAAGAGAGCTCTTAAGCTGGCATCCAATGGGAATGTTACAGATCTTATCATTCCTTCTTTCAAAAAGATGGATACATTTTTGAAAGAATGGAACATTACGAAGAATGATCAGCGCGAACTTTTTCTGGCTATTTCCATTATTTTGAAAGACAATAAAGGTTCAGCAAAGGATTCTTACTCCTTTCTTCTGAAGTACTTGGCAACTTTTAATGGTGAGGATGCTTACACAATAAGTGAAGCAAAAGAAGAAGCTGTGAGGGCCATTATAGAATTTGTTAAAGCACCAGATATGTTCCAGTGCGACTTACTAGATATGCCTGCTGTGGGACAACTGGAGAGAGATGGAAAGTATGCATTGGTATACCGCTTGTTACGAATTTTCCTCACTCAAAGATTAGATTCTTATTTGGAGTTTCAAGCTGCAAATTCCGCATTATTGAAAAGCTATGGTCTCATCCATGAAGATTGCATAACAAAAATGCGGTTAATGTCTCTTGCTGATCTTGCTTCCAAAGGATCTGGAGAAATTTCTTATGCTTCTGTGAGGGATACATTGCGGGTTACAGATGATGAGGTGGAATTCTGGATTGTTCGAGCAATCAGTGCAAAAATTATAGATTGTAAAATGGATCAGATGCGCCAAGTAGCAGTTATAAACCGGTCTACAGAACGGATATTTGGACCACCTCAGTGGAAAGAATTACACTCAAGACTTTCAATTTGGAAGGAGAATGTTGCAAATCTTTCAAAAAATATCCAAAAGGCAAATGCTGCTGCTGATCTGATGCCTGAGGCATTGCAAGGGGTGGCAGTCCAATAA___GCATTTATTTTGCATCTCGCTAGAATTTTGGCCGACACACATGCTTTGGAGTTTTCTAGGGATCAGTGAAAGAGGTGAGTTAACGTTCACGAGCAGGAAGATTGGGTGGTAATGCATTAAGGTTTCTTGTGTCAAAACTACAGGCTCATAGCCGAAGCTAATGATGAGATGGTTTTATTTTCTCCACGGCATTTAGTTAATGGGTAATTGGACAGTTGTCTGTGGTTCAGCATGTAATCCCAGCTAGAAGATTATTGGGATGTTATCTAAAATTTTATGGAAGAGTCAAGACCAAATTGATGCCAACCAAAATAGAATGATGCCTTTAAATGCGGATCATATGTTGCTTTATACATCAATTATTTTTACATGTTCCATTATTTCCTCTTCA

Fln Alignment:

sp_v1.1_unigene15727___MATLVETSDEDATLAVARFIADMAWANAGPEVAETEVIHYVDEAQAYMVEGRWSDVVSLLLTTADLIFANSAEKDLECIFTVICNLVTKAERPDEALAMADQIVTKVTQQPSDKPALRLKVLFNLYNVLENPYSKFLVYKRALKLASNGNVTDLIIPSFKKMDTFLKEWNITKNDQRELFLAISIILKDNKGSAKDSYSFLLKYLATFNGEDAYTISEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVGQLERDGKYALVYRLLRIFLTQRLDSYLEFQAANSALLKSYGLIHEDCITKMRLMSLADLASKGSGEISYASVRDTLRVTDDEVEFWIVRAISAKIIDCKMDQMRQVAVINRSTERIFGPPQWKELHSRLSIWKENVANLSKNIQKANAAADLMPEALQGVAVQ
B8LQ92_______________MATPVETSDEDATLAVARFTADMAWANAGPEVAETEVIHYVDEAQAYMVEGRWSDLVSLLLTTADLIFANSAEKDLECIFTVICNLVTKAGRPDEALAMADQIVTKVTQQPSDKPALRLKVLFNLYNVLENPYSKFFVYKRALNLAANGKVADLIIPSFKKMDTFLKEWNIAKNDQRELFLAMSNILKDNKGSAKDSYSFLLKYLATFNGEDAYTISEAKEEAVRAIIEFVKAPDMFQCDLLDMPAVAQLERDGKYALVYRLLQIFLTQRLDSYLEFQAANSALLKSYGLVHEDCITKMRLMSLADLASKGSGEISYASVRDTLRVTDDEVEFWIVRAISAKIIDCKMDQMRQVAVVNRSTERIFGPPQWKELHSRLSLWKENVANLSRNIQKANAAADQAPEALQGVAVQ

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
436		83		16	0.994512
522		14		85	0.993533
615	7	14	78		0.999974
805	88	11			0.923564
806	88	11			0.923564
807		11		88	0.923564
809	88			11	0.923564
811	88			11	0.923564
813	11			88	0.923564
1224	16		83		0.994512
1310		10		90	0.992513
1319		11		88	0.993486
1374	50		50		1.0
1665		76		23	1.0
1667		76		23	1.0
1669	23			76	1.0
1672			23	76	1.0
1673		76	23		1.0
1674		76		23	1.0
1677		23	76		1.0
1682		76		23	1.0
1683	76			23	1.0
1685			76	23	1.0
1686	25			75	1.0
1690	91	8			0.90298
1691		8	91		0.90298
1693			25	75	1.0
1694		27	72		1.0
1724	11		88		1.0
1761		47		52	1.0
1779		16		83	1.0
1808			70	30	1.0
1817		10	90		0.991528
1818		10		90	0.991528
1819		12	87		0.993502
1822	12	87			0.993502
1839		14		85	0.994477
1858	71	14		14	0.988635
1859		14	85		0.994477
1860	71	14			0.988635
1862			85	14	0.994477
1863		83		16	0.995451
1864		83	16		0.995451
1865	16			83	0.995451
1866		16	83		0.995451
1869		16	83		0.995451
1873			16	83	0.995451
1874			16	83	0.995451
1875	83			16	0.995451
1878	83		16		0.995451
1896		66	33		0.997452
1898			66	33	0.997452
1899	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain