SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15721

Length: 1876 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15721

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQ14_RICCO	-	-	3.0e-37	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	80%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	80%
Blast2go	mitochondrion	GO:0005739	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	80%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNP8

Fln msg:

Fln protein: MADAYWRDGRSLGIPAPAKRARGDLPPAGISGGRDISGYLPDVAGRPFLRESNGPGSLDSHVRNGLSYSGGGLTSGDIGGLGGSLGTRLGGSGGYGGLSGSSLPDSVLMGQRSGIGSADPGLGGKLGSLGLGYQRSEPQGLREPLRRPDEHLPSDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEARRPGGDPLVLCFVDFSDARCAATALEALQGYKFDQTDRESSGLKLQFARFPGPRGPSGSARDEPYRGNRDRDDSRGRFRR*

Protein Length: 276

Fln nts: ATGGGAGTAAACCAAGTAGTGGACCAACGAAGAGATGCGGTGGAAAAAGCTATAGAAGCCAACGCGGCGCTTGGGTGTCAAGCATCACTTCGAAAGCTTCTCTACATCTTCTGCTCAAACGGTTTCCGATTTTACATATTCTCTCGATTGGAGGATTTAGAGCTTCTCTGTGTCCTCAGCTGACCATTATCTGGTTTCTATTTTGGGTCATTCTTCAAAGATTTCAGCCGTGGTTGCAGTTTGCTGCGTGTTTGAAGGAACTCA_-_ATGGCGGACGCTTACTGGAGAGATGGCCGCTCATTAGGGATTCCAGCTCCGGCCAAGCGCGCTCGTGGTGATCTCCCACCAGCAGGGATTTCTGGCGGTCGTGATATTTCTGGTTATTTACCTGATGTGGCGGGTCGACCATTTCTACGGGAATCCAACGGCCCTGGATCTCTGGATTCTCACGTTCGAAATGGGCTTTCATATTCTGGTGGGGGGTTAACATCTGGTGATATTGGTGGTTTGGGAGGCTCCCTTGGGACAAGGTTGGGAGGCAGTGGAGGTTATGGAGGATTGTCAGGTTCGTCCCTTCCTGACTCTGTTTTAATGGGTCAGAGGTCAGGCATTGGAAGTGCAGATCCTGGACTTGGGGGGAAGTTAGGGAGCCTAGGTTTGGGCTATCAAAGGTCAGAGCCGCAGGGATTGAGAGAACCTTTGAGAAGGCCTGATGAGCACCTTCCATCTGACGCGTCAAATACCCTCTTTGTTGAGGGTCTTCCTGCTGATTGCACTCGCAGGGAAGCTGCACACATTTTCCGTCCATTCATTGGTTTCAAAGAAGTTCGACTGGTACAAAAGGAGGCTCGACGTCCTGGTGGAGATCCTCTTGTGTTATGTTTTGTTGATTTTTCCGATGCAAGATGTGCTGCAACTGCGTTAGAAGCGTTACAAGGGTATAAGTTTGATCAAACTGACCGTGAGTCATCCGGTCTAAAATTGCAATTTGCACGTTTTCCTGGTCCACGTGGGCCATCTGGTTCTGCTCGAGATGAACCTTATCGTGGAAATCGTGATCGTGACGACTCTCGTGGTCGCTTTCGACGTTGA___TATTACAGTCAAACAGGTACATGCGCTTTTGCAGAAAGATTCGCTGGTTGATCGAGCTAGTTTTGAAGGAGCGAATGCGGGAATCAAGTATCAGTATGTGGTGTTGTCGGTATTAGTTTAATGCGGGATGTATTTTGGCCTAATTAGAACCAAAGTGGCTAGTGCGTAACGCCGGAACTGTTTAAAGTTAAGGATTCCAGTATTATGGAACATCATTTGGTCGTTTTGACTATATGGATTCTCCTGCAGTAGTAATTTAACTTTTGGACTATAAGAATATTCACAGAAGTGACAATTAATATTACCTGGTACAAGCGATCTGCGTTTCTTTATCGCGGTTTTCCGTAATTCTCGATAGACTTTTAATCTGTGCAAGGGTTTATTTATTATTACTCAGATTTATTATACATGGTACAGTCGATCGTTGTTTTTTAATTTCGCGGCACGAATGAGATGGGTTTCTATTCATGCTTTGCACACAAGTATCGATAGAATTTAACGCGCATGGATTTCGTTGTTTCCTATATTGTCATTATTTACAGTAGTCTTATTGTTAGAGGTCATGTTTTGTCCACAGTTTGGTCGATTATCGCTAAACGTTCGCATGGCGGTGTAGTTAAACTGTCCTAAAATATATTGGCAGCATTTGTTTCAATTCTCGAGATGGAAGATATATATTGCATCAGACGTTTCTATAGATCGGCTGCATTTGTTTAAATGTTTCCGAGATGGAAGATGTACGTTGCTGCACCAATTCTCCCAAGTTATTAGTCGTTTGCTCCTCTAG

Fln Alignment:

sp_v1.1_unigene15721___MADAYWRDGRSLGIPAPAKRARGDLPPAGISGGRDISGYLPDVAGRPFLRESNGPGSLDSHVRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPDSVLMGQRSGIGSADPXXXXXXXXXXXXYQRSEPQGLREPLRRPDEHLPSDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEARRPGGDPLVLCFVDFSDARCAATALEALQGYKFDQTDRESSGLKLQFARFPGPRGPSGSARDEP
A9NNP8_______________MADAYWRDGRSLGIPTPAKRARGDLPPAGISGGRDIPGYLPDMAGRSFMRESNPPGSLDSHARNGLPYSAGGLSSADIGGLGGSLGTRLGGSGGYGGLSGSSLADSVLMGQRPGIGNADPGYGGKLGSLGLGYQRSDAQGLRDPLRRPDEHLPPDASNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEPRRPGGDPLVLCFVDFTDARCAATALEALQGYKFDETDRESTGLRLQFARFPGPRGPSGSARDEP

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
351		75	25		0.996473
352	75		25		0.996473
634		14		85	0.993533
949	20			80	0.995493
951	80			20	0.995493
952	20			80	0.995493
955	80		20		0.995493
956	80		20		0.995493
957		80	20		0.995493
1022			87	12	0.992554
1052	84	10	5		0.999846
1053	89		10		0.999919
1060		10		89	1.0
1062			91	8	1.0
1065	89		7	2	0.999999
1068	92			7	1.0
1070	7			89	0.999999
1110			43	2	1.0
1112	43		2		1.0
1113		43	2		1.0
1114	43	2			1.0
1118	2		43		1.0
1121	2			43	1.0
1194	19		80		1.0
1421	18	7			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain