SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15716

Length: 2023 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene15716
TACATGGGGATAGGATTGCCGATGTGGATAAAACCACCCTCTGCTGTTCTGTTTCTCTCTCTCATTCTTTGGTGAGTAGGAATCATTTGGGCTGTTGGTAATATTGCTGCTGGATGGATCATGACTCTGTTGCCCTGCCAAGACCCTGTTGCAGTTTTTCTGCTTGGTGAGGGGGCCATGCAATTGGGTCCATCTCTTTCACTGGTATGATTTCACTGGAGTCTTTCTAGTTAGTTTTGTAACTCGGTATTGTTTCTTCCATTAACTGGTTTCAAGTTTTTGCTCTCTCCGGCTGATTTCTACCATAGCTGGTCTCATCTAATTACATCTCGGAGGGTGTTTTCAGAGTGAATTTGTAAAGCTGTATGACATACCTCTATCCTTAGAGTTCTTCTGTACAAGTTCTCAGAATTAGTATAAATGACTACTTTAACTGCAACCACAGCTCTAGTAGATGTTGCAGGGGCAGCAACAGGTCACCGTAACTCTTTGAGCAATTTCCCCAAAACATCATCCTCACCGTCATCACCATCTTCAGCAATTCAACAGCCCATCGTCTCAGGCAAAATCCATTTCAATGCATTTACTGGTCTGTCAAGGTGCAAGAAGCAGCTCTTGTTTTGCAAGAGTGTGAGGACATGGGGGAGTGTTCGCCTGCACTGTGTAGCAGGAGACAGAGTAAGGACTCGTGCTGTAGCGGCCGGAGTTGCAGAGGCTATTGTGGGAGAAGAGGAAGCAATAGAACAAGAGCAAGCTGGCGAAGACACGGCGGTTCTGCCGAGACTGAAACCCAAGACTGGGAAAGCGGCATTGCCTCTTAAAAGTGACAGAAAGCGTTCAAAAAGATTTTTAGAAATTCAGAAGTTGCGAGTGAGGAAGGAGGAATATGATCCTATAACTGCAATTAGTTTGCTCAAGCAAACTTCAAGTACAAAGTTTGTAGAGACAGCAGAAGCTCATTTCCGTCTCAACATTGATCCCAAATACAATGACCAGCAATTAAGAGCAACGGTGATTTTACCTAAAGGAACGGGTCAGACTGTTAGGGTTGCTGTTCTTGCACAAGGAGAAAAACTTATTGAGGCAGAGAAAGCAGGAGCTGATTTGGTGGGAGGAGAAGATTTGATTGCACAAATTAAAGGAGGCTTCATGGAGTTCGATAAATTAATTGCTTCTCCAGATATGATGCCAAAGGTTGCAAGTTTAGGGAAGTTACTGGGTCCTCGTGGACTTATGCCAAATCCCAAAGCCGGCACTGTCACCACAGATATTCCACAGGCTATCTCCGAATTTAAAAAAGGAAAGGTAGAATATCGAGCAGATAAGACGGGGATTGTTCATATTCCATTTGGAAAGACAGACTTTCCTGATGAGGATCTTCTTACAAATTTAATTGCAGCAGTTAACTCAGTGGATGCTAACAAGCCTTCTGGAGCTAAGGGAATCTACTGGAAAACAGCCCACATATGTGCAACAATGGGTCCATCGATCAGATTGATTATAAAAGACACGCGTGAATTCAAGCTTCCATCATGAGTTGTCATATATTCATTTTTGTTGGTGTATAGTATACAAATCCTTTGATAGGTTAGGAATTTCCAGTAAATGCAGGAGTAATTCTTTTAAAATGAAAGCTGTAGGATTCGTAAGACCTGGGATTTTAGTTACTTGGTCTTTTTATCATAAATGCAATTTGGTTAGTCTGGCTTGTTCGATTCTCATTTTGACCTTTGACTTGAATGAAGCATTTTCTCAACCTCCTAATTCTAGCTGTCATGTTTATCTTATGCCAACTCCCCAGGATCTATCTCAAACAGCATGCACTTCTCATGAGTTTGGTTGCTATGTTGATTTGTCTCATGTAGTCTCTAATAGAAGCTCGTAACGGTAGATGTTTTGATAAAAGTGTTTGCATCAGGGATGCCCTTTGTTTTGTGTTTGTAGTTGGTCTATGTCCAGACTGACACAATTACAAAGCTATCGTTATCAAGGGGGATGGCAATATGGTAATTTGCCATTGATT

Ace file of the UniGene sp_v1.1_unigene15716 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ribosomal protein n=1 Tax=Picea sitchensis RepID=A9P244_PICSI	-	-	86%
FL-Next	sp=Ribosomal protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	87%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	87%
Blast2go	RNA processing	GO:0006396	Biological Process	87%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	87%
Blast2go	rRNA binding	GO:0019843	Molecular Function	87%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	nucleus	GO:0005634	Cellular Component	87%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein L1	IPR002143	-	87%
Blast2go	Ribosomal protein L1, bacterial-type	IPR005878	-	87%
Blast2go	Ribosomal protein L1, 2-layer alpha/beta-sandwich	IPR016094	-	87%
Blast2go	Ribosomal protein L1, 3-layer alpha/beta-sandwich	IPR016095	-	87%
Blast2go	Ribosomal protein L1, conserved site	IPR023673	-	87%
Blast2go	Ribosomal protein L1, superfamily	IPR023674	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P244

Fln msg:

Fln protein: MTTLTATTALVDVAGAATGHRNSLSNFPKTSSSPSSPSSAIQQPIVSGKIHFNAFTGLSRCKKQLLFCKSVRTWGSVRLHCVAGDRVRTRAVAAGVAEAIVGEEEAIEQEQAGEDTAVLPRLKPKTGKAALPLKSDRKRSKRFLEIQKLRVRKEEYDPITAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVILPKGTGQTVRVAVLAQGEKLIEAEKAGADLVGGEDLIAQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTDIPQAISEFKKGKVEYRADKTGIVHIPFGKTDFPDEDLLTNLIAAVNSVDANKPSGAKGIYWKTAHICATMGPSIRLIIKDTREFKLPS*

Protein Length: 373

Fln nts: TACATGGGGATAGGATTGCCGATGTGGATAAAACCACCCTCTGCTGTTCTGTTTCTCTCTCTCATTCTTTGGTGAGTAGGAATCATTTGGGCTGTTGGTAATATTGCTGCTGGATGGATCATGACTCTGTTGCCCTGCCAAGACCCTGTTGCAGTTTTTCTGCTTGGTGAGGGGGCCATGCAATTGGGTCCATCTCTTTCACTGGTATGATTTCACTGGAGTCTTTCTAGTTAGTTTTGTAACTCGGTATTGTTTCTTCCATTAACTGGTTTCAAGTTTTTGCTCTCTCCGGCTGATTTCTACCATAGCTGGTCTCATCTAATTACATCTCGGAGGGTGTTTTCAGAGTGAATTTGTAAAGCTGTATGACATACCTCTATCCTTAGAGTTCTTCTGTACAAGTTCTCAGAATTAGTATAA_-_ATGACTACTTTAACTGCAACCACAGCTCTAGTAGATGTTGCAGGGGCAGCAACAGGTCACCGTAACTCTTTGAGCAATTTCCCCAAAACATCATCCTCACCGTCATCACCATCTTCAGCAATTCAACAGCCCATCGTCTCAGGCAAAATCCATTTCAATGCATTTACTGGTCTGTCAAGGTGCAAGAAGCAGCTCTTGTTTTGCAAGAGTGTGAGGACATGGGGGAGTGTTCGCCTGCACTGTGTAGCAGGAGACAGAGTAAGGACTCGTGCTGTAGCGGCCGGAGTTGCAGAGGCTATTGTGGGAGAAGAGGAAGCAATAGAACAAGAGCAAGCTGGCGAAGACACGGCGGTTCTGCCGAGACTGAAACCCAAGACTGGGAAAGCGGCATTGCCTCTTAAAAGTGACAGAAAGCGTTCAAAAAGATTTTTAGAAATTCAGAAGTTGCGAGTGAGGAAGGAGGAATATGATCCTATAACTGCAATTAGTTTGCTCAAGCAAACTTCAAGTACAAAGTTTGTAGAGACAGCAGAAGCTCATTTCCGTCTCAACATTGATCCCAAATACAATGACCAGCAATTAAGAGCAACGGTGATTTTACCTAAAGGAACGGGTCAGACTGTTAGGGTTGCTGTTCTTGCACAAGGAGAAAAACTTATTGAGGCAGAGAAAGCAGGAGCTGATTTGGTGGGAGGAGAAGATTTGATTGCACAAATTAAAGGAGGCTTCATGGAGTTCGATAAATTAATTGCTTCTCCAGATATGATGCCAAAGGTTGCAAGTTTAGGGAAGTTACTGGGTCCTCGTGGACTTATGCCAAATCCCAAAGCCGGCACTGTCACCACAGATATTCCACAGGCTATCTCCGAATTTAAAAAAGGAAAGGTAGAATATCGAGCAGATAAGACGGGGATTGTTCATATTCCATTTGGAAAGACAGACTTTCCTGATGAGGATCTTCTTACAAATTTAATTGCAGCAGTTAACTCAGTGGATGCTAACAAGCCTTCTGGAGCTAAGGGAATCTACTGGAAAACAGCCCACATATGTGCAACAATGGGTCCATCGATCAGATTGATTATAAAAGACACGCGTGAATTCAAGCTTCCATCATGA___GTTGTCATATATTCATTTTTGTTGGTGTATAGTATACAAATCCTTTGATAGGTTAGGAATTTCCAGTAAATGCAGGAGTAATTCTTTTAAAATGAAAGCTGTAGGATTCGTAAGACCTGGGATTTTAGTTACTTGGTCTTTTTATCATAAATGCAATTTGGTTAGTCTGGCTTGTTCGATTCTCATTTTGACCTTTGACTTGAATGAAGCATTTTCTCAACCTCCTAATTCTAGCTGTCATGTTTATCTTATGCCAACTCCCCAGGATCTATCTCAAACAGCATGCACTTCTCATGAGTTTGGTTGCTATGTTGATTTGTCTCATGTAGTCTCTAATAGAAGCTCGTAACGGTAGATGTTTTGATAAAAGTGTTTGCATCAGGGATGCCCTTTGTTTTGTGTTTGTAGTTGGTCTATGTCCAGACTGACACAATTACAAAGCTATCGTTATCAAGGGGGATGGCAATATGGTAATTTGCCATTGATT

Fln Alignment:

sp_v1.1_unigene15716___HRNSLSNFPKTXXXXXXXXSAIQQPIVSGKIHFNAFTGLSRCKKQLLFCKSVRTWGSVRLHCVAGDRVRTRXXXXXXXXXXXXXXXXXXXXXXXEDTAVLPRLKPKTGKAALPLKSDRKRSKRFLEIQKLRVRKEEYDPITAISLLKQTSSTKFVETAEAHFRLNIDPKYNDQQLRATVILPKGTGQTVRVAVLAQGEKLIEAEKAGADLVGGEDLIAQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTDIPQAISEFKKGKVEYRADKTGIVHIPFGKTDFPDEDLLTNLIAAVNSVDANKPSGAKGIYWKTAHICATMGPSIRLIIKDTREFKLPS
A9P244_______________HRNTLSNFPKTSSLSSSPSSAIQQAIISGKIHFNAFTGLSRCKKQLLFCENVRTWGSVRLHCVAGGRVRT---CAVAAGVAESLVEATEQEQAGEGTVALPRLKPKTGKAALPLKSDRRRSKRFLEIQKLRVKKEEYDPITAISLLKQTSSTKFVETTEAHFRLNIDPKYNDQQLRATVILPKGTGQAVRVAVLAQGEKLIEAENAGADLVGGEDLIAQIKGGFMEFDKLIASPDMMPKVASLGKLLGPRGLMPNPKAGTVTTDIPQAISEFKKGKVEYRADKTGIVHIPFGKTDFPEEDLLTNLIAAVNSVDTNKPSGAKGVYWKTAHICATMGPSIRLIIKDTREFKLPS

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
915	12	87			0.992554
936		87		12	0.992554
1026		12		87	0.992554
1144		10		90	0.90298
1147	10			90	0.90298
1162		11		88	0.923564
1163		11		88	0.923564
1452	87		12		0.992554
1492	12		87		0.992554
1634		16	83		1.0
1821	8	91			0.999807
1835		8	91		0.999807
1837		91	8		0.999807
1842		17	8	73	1.0
1843			8	91	0.999807
1844			91	8	0.999807
1847		8		91	0.999807
1849	8		91		0.999807
1851		91	8		0.999807
1945		92	8		0.999718
1946	12	88			1.0
1947			8	92	0.999718
1948	87	4		8	0.999414
1949		91	8		0.999766
1950	8	4		87	0.999414
1957	90		9		0.999872
1959	83	5		11	0.999887
1960	72	16	11		1.0
1961	16			11	1.0
1962		11		88	0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain