SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15712

Length: 1555 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15712

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATS9; ATS9 (ARABIDOPSIS NON-ATPASE SUBUNIT 9); K03036 26S proteasome regulatory subunit N6	-	-	69%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	84%
Blast2go	protein	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	binding	GO:0005488	Molecular Function	92%
Blast2go	proteasome regulatory particle, lid subcomplex	GO:0008541	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	92%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	92%
Blast2go	PCI/PINT associated module	IPR013143	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9HLN6

Fln msg: your sequence is longer than subject: 483 - 422

Fln protein: MGRLTLSFTPHVETSLRGSWSIASEIKGALQYACLRDAAQFAEKTSFRSLCRSVFLRFAVMASIPATTESLSRALDIKDTDPAESISILRQIIENPSSSSEAIRVKEQAISNLSDLLTQEKRGEELRSLLTLLRPFFLLIPKAKTAKIVRGILDAVAKIPGTTDLQISLCREMVEWTRLEKRTFLRQRVEARLAALLMETKEYSEALTLISGLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGFSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVNQADDVAGLIASKAGLLYMGVELDAMKAVADAHSKRSLKDFEDALKTYQAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEISHISDLIGLPMETVEKKLSQMILEKKFAGTLDQGAGCLIIFDDPKPDAIFSSTLETISNISKVVDSLYLKSAKIMA*

Protein Length: 484

Fln nts: _-_ATGGGACGTCTGACCTTGTCTTTCACTCCGCATGTTGAAACTTCACTTCGTGGTTCATGGTCCATTGCAAGTGAAATAAAAGGAGCCCTGCAGTACGCATGCCTGCGTGACGCTGCTCAATTCGCTGAGAAAACATCTTTTCGATCGCTCTGCCGGTCTGTTTTTTTAAGGTTTGCAGTAATGGCATCGATCCCTGCAACAACGGAGTCTCTTAGTCGTGCATTGGACATTAAGGATACCGACCCTGCAGAGTCAATTTCTATCCTTCGTCAGATAATTGAAAACCCTTCTTCATCCTCTGAAGCTATCCGGGTCAAGGAGCAGGCGATTTCCAACCTTTCTGATCTTCTCACACAGGAGAAGAGGGGGGAAGAGCTGAGGAGTCTCCTGACACTTTTACGCCCCTTCTTTTTGCTGATTCCAAAAGCTAAGACTGCTAAGATTGTCAGAGGAATACTTGATGCAGTTGCGAAAATCCCCGGAACAACAGATCTTCAGATATCACTCTGTAGGGAAATGGTGGAATGGACCCGCTTGGAGAAACGGACTTTTTTGAGGCAGAGGGTTGAAGCAAGGCTTGCTGCTTTATTAATGGAAACCAAGGAGTACTCTGAAGCTTTAACTCTCATTTCTGGTTTGGTAAAGGAGGTTAGGAGGCTGGATGATAAGCTGCTTCTTGTGGATATCGATTTATTGGAGAGTAAACTTCATTTCTCTCTTAGAAATCTTCCAAAGGCTAAGGCTGCGCTAACTGCAGCCAGAACAGCGGCGAATGCAATATACGTTCCACCTGCTCAACAAGGGACTATTGATCTTCAGAGTGGTATTCTTCATGCCGAGGAGAAGGATTATAAAACGGGTTTCAGCTACTTCTTTGAGGCATTTGAGGCTTTTAATGCTCTGGAGGATCCGCGTGCAGTATTTAGTTTGAAGTACATGCTTTTGTGCAAGATCATGGTCAACCAAGCTGATGATGTCGCTGGTCTCATTGCTTCAAAGGCAGGCTTGCTCTATATGGGAGTGGAATTGGATGCTATGAAAGCTGTTGCGGATGCACACTCAAAGCGCTCTTTGAAAGATTTTGAAGATGCACTTAAAACTTACCAGGCACAACTAGAGGAAGATCCTATTGTTCATAGACACCTGTCTTCTTTGTACGACACCCTTCTGGAGCAGAATCTCTGCCGTTTGATTGAACCTTATTCAAGGGTTGAAATATCACATATATCTGATTTGATTGGATTGCCCATGGAAACTGTGGAAAAGAAGCTCTCTCAGATGATATTGGAGAAAAAATTTGCTGGGACTCTTGACCAGGGTGCAGGTTGTCTTATTATTTTTGATGATCCAAAGCCAGATGCCATCTTCTCCTCCACTTTGGAAACGATTTCAAACATTAGCAAAGTTGTAGACAGCCTTTACCTGAAGTCAGCAAAGATTATGGCCTAA___GCTAAGCTTATTGGTTTGCATCTCTATGTCAAAAGTCAGTGATTTAGATTTCTGATAAGCAGGGAAGTTGTAAAAGGAGTGTGATTTCATTGGAGTTTGATAAAAC

Fln Alignment:

sp_v1.1_unigene15712___IPATTESLSRALDIKDTDPAESISILRQIIENPSSSSEAIRVKEQAISNLSDLLTQEKRGEEXXXXXXXXXXXXXXIPKAKTAKIVRGILDAVAKIPGTTDLQISLCREMVEWTRLEKRTFLRQRVEARLAALLMETKEYSEALTLISGLVKXXXXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAQQGTIDLQSGILHAEEKDYKTGFSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVNQADDVAGLIASKAGLLYMGVELDAMKAVADAHSKRSLKDFEDALKTYQAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEISHISDLIGLPMETVEKKLSQMILEKKFAGTLDQGAGCLIIFDDPKPDAIFSSTLETISNISKVVDSLYLKSAKIMA
B9HLN6_______________LPATTDSIAQALEAKN--PSESISIFYRILESPSSSPESLRIKEQSITNLSDLLRQENRAEELRSLLTQLRPFFALIPKAKTAKIVRGIIDAVAKIPGTSDLQISLCKEMVQWTRAEKRTFLRQRVEARLAALLMESKEYSEALNLLSGLIKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIADLIELPIDHVEKKLSQMILDKKFAGTLDQGAGCLVIFDDPKTDAIYPATLETISNVGKVVDSLYVRSAKIMA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1496	81		18		1.0
1541	12			87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain