SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15705

Length: 1233 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15705

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S6 n=2 Tax=Spermatophyta RepID=RS6_ASPOF	-	-	78%
FL-Next	sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	protein	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	nucleolus	GO:0005730	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S6e	IPR001377	-	95%
Blast2go	Ribosomal protein S6, eukaryotic	IPR014401	-	95%
Blast2go	Ribosomal protein S6e, conserved site	IPR018282	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNX7

Fln msg:

Fln protein: MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRLAQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKKRASRVSTGSKPSVA*

Protein Length: 251

Fln nts: ATGGGGGTTTTTGGTCATCCGTTAAACCCTCGTGTCTAAAGGCATTGGGATGATTTCACTTGATCGCTAACCCTGCCTTCAAACCCTAGCCTTCAACGTAAATATCAACGAAACCCTAACGCTTTTTAAGAGTTATACCTCATCGTATTGTGTTTCCATTTGGCGTGAGGAGCGTTTGAGCGAAGCGAGTGCTGGCAGCATCCCCATTGTCAGTGACCCTCTTCGAGCCGCA_-_ATGAAGTTCAATATTGCAAATCCCACCACGGGATGCCAGAAGAAGCTGGAGATCGATGATGATCAGAAACTGCGTGCATTTTATGATAAGAGGCTTGCACAGGAGGTTAATGGTGATGCCCTTGGAGAGGAGTTCAAGGGATATGTCTTCAAAATTATGGGAGGATGTGATAAGCAGGGTTTTCCCATGAAACAAGGAGTTCTTACTCCAGGTCGTGTACGCCTGTTATTGCACAGAGGCACCCCCTGCTTTCGTGGGTATGGAAGGCGTAATGGTGAGAGGAGACGAAAGTCTGTTAGGGGATGCATTGTTAGCCCCGATCTTTCTGTCTTGAACCTGGTCATTGTTAAGAAGGGAGAAAATGATCTTCCGGGTCTGACGGACACTGAAAAACCAAGGATGCGGGGACCTAAAAGGGCATCGAAAATCAGAAAATTGTTCAATCTTTCCAAAGAGGATGATGTTAGGAAATATGTCAACACATACCGTCGGACTTTTCAGTCTAAATCAGGTAAGACGCGGAGCAAAGCTCCAAAGATTCAGAGGCTTGTAACACCATTGACTCTGCAAAGGAAGCGTGCTAGAATTGCAGAAAAGAAAAAGAGAATTGCTAAGGCCAAGAGCGAGGCAGCTGAATATCAAAAGCTCCTTGCTTCAAGGTTGAAGGAGCAGCGTGATCGCAGGAGTGAGAGTTTGGCAAAAAAGAGAGCATCCCGTGTTTCAACTGGATCAAAACCATCAGTTGCTTAG___TATTATGTGTTTTTATCTATTTATGTGAGGTGAACTCCCTTGCTTTGCATGGCATTGTACTGAGTGCAATTTTAAAATCGGCAAGCAATGATTTGCTTATTGAGTATTGTTTGAGAATATATAGTCTTGGTATATTTTGATGAAGGCTCAGACTGCAGGATTTTAAATATATGTTAGAAACTGTAATTCAAAAGCATTTTTTGCAGCTTTGGACAAAAGTAAAGTACCTTTTTTTTAATTCAAGTGTGTTT

Fln Alignment:

sp_v1.1_unigene15705___MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRLAQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFXXXXXXXXXXXXXXXXXCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQXXXXXXXXXXXXXXXXXXXXXXYQKLLASRLKEQRDRRSESLAKKRASRVSTGSKPSVA
A9NNX7_______________MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRLAQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQRKRARIAEKKKRIAKAKNEAAEYQKLLASRLKEQRDRRSESLAKKRQSRVSTGSKPSVA

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
1133	1		41	56	1.0
1140	59	40			1.0
1199	51		48		1.0
1215		78		21	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain