SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15668

Length: 2014 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15668
CGTCGTGACCTTGGCTGTCACTCAATAATTTTTTTTGGGAGACACAGCATCATTCGGACAAACGGGCACTTCTCCATTTCGTGGGTCTTACTCGCAACCGACCAATTCTATAAAGACCGTATAGATAATGCTCTATCTGCCATTATCCCTGCACCACTAGAAATGTTTGAGATTTAGAGTTCTTTACAAATTTTCTAATCGCCCAGTCACCAAATCCAGTGCTTCATCCACTTCACAGTCGGCTCTAATGGCTGGAATGGCGATGGACTTGAGCGCACACTTCGCGAAATTGTCAGCACAACCCATCACATCGAATTCCAATCAGAGTGTTCTTTTCCATGCAACAAGGAGCTGGAACTTCAAATGCCCTTCGAGCCCTGGGGCGCCTCTTAGACTGAGAACGTCAAGCTGGAGAAAGAAGAGGAATGTCACAGAGTTGAAGAAGAGGTCAACCATGGTCGAAGCCTCCGCTACCACACAGGGCCAAAGTACTGCCGAAGTTGTAACTGAATTCCCTGCTGACACTCGTATTCCTGCTACCATCCTCACGGGTTTCTTAGGTTCAGGCAAGACAACTCTTCTCAACCATATTCTAACCTCTGAACATGGAAAAAGAATTGCAGTGATAGAAAATGAGTATGGTGAAGTAGATATCGATGGATCATTAGTTGCTTCACAGATGAAAGGAGCTGAAGATATTGTAATGCTCAATAATGGTTGTCTCTGCTGTACAGTAAGAGGTGATCTTGTGCGAATGCTTTCAGATTTGGTGACAACAAAGAGAGACAAATTTGATCATATAGTTATCGAAACAACAGGTCTTGCAAATCCTGCACCAATAATTCAGACATTCTATGCTGAAGATAAGATTGCAGAACATATAAAACTTGATGGAGTAGTTACTTTGGTTGATGTAAAAAATGCACAAAGACATCTGGAGCAGGTTAAGCCCAAAGGGGTTGTGAATGAGGCTGTCGAACAAATTGCATATGCTGATCGCATCATACTTAACAAGATTGATTTGGTTGGTGAAGCAGAGACAAAGGCGTTGATGCAAAAGATAAAGCGAATCAATGGAATGGCCCGTGTTAAGTATACCAAGTTTGGTGTTGTTGACATGGACTATGTCCTTGGTATTGGTGGCTTTGACTTGGATAGGATTGAAGCTGAAGTTCGTACAGAAACAGAAAGTTTAAGTGAAGATCATGATGAACATGACCATCATCATGAGCATAAGCATGACCACGATCATCATGAGCATGGGCATGACAGTAACGGGCATAGCCATGAGCATGATCATGTACATGACCCTGGTGTTTCTTCTGTCAGCATTGTTTGTGATGGAACATTAGATCTTACCAAGATAAATATCTGGTTGGGCAGACTGTTGCTGGAACGGAGTGACGATATTTACAGAATGAAGGGCCTGCTTTCTGTTGCTGGATTTAATGAACGATATGTTTTTCAGGGTGTGCATGATCTTTTCCATGGCTCCCCTGACAGAGCATGGGGTTCTGATGAGAAAAGAACAAATAAGATCATATTTATTGGGAAAAACCTAGATGAAGAAGCCTTACAGAAGGGTTTCAGGGAGTGCTTGCATTGATCTTATATTTTGAAATTTGGAATGTAGCCTAAAGATTTTTTATCATTAAAAGATGAGCATGCCATTGTAGATGGTGCAGTCCTTATAATAGAATTTATCTAGAGAAGGGTTGAACTTGGAGATGACTTTGCTCATATTCTTATTAGAAATTTGTAGGATGTTAGACCATCAATACAGTGAAATATGAAATGTTGTATGCTGATCCATACAATATTTGTAGCTTTTTCCTTTGTGATCAATGTGAAAATTCTTGCAATGAACGGCCACTTGAGTCTTGGTAAATTGTGCACCTGAAAATTTCCATGCTCTTCATTTAGTTCTAGATCAACCACTTATCATATTCTTACCAAATAAATGTCATCTTCTCATGTACTTAACAGAAATAAATTAAGTTGCCTTGGACAATAC

Ace file of the UniGene sp_v1.1_unigene15668

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PTAC17; PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17)	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid chromosome	GO:0009508	Cellular Component	0.0	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLY3

Fln msg:

Fln protein: MAGMAMDLSAHFAKLSAQPITSNSNQSVLFHATRSWNFKCPSSPGAPLRLRTSSWRKKRNVTELKKRSTMVEASATTQGQSTAEVVTEFPADTRIPATILTGFLGSGKTTLLNHILTSEHGKRIAVIENEYGEVDIDGSLVASQMKGAEDIVMLNNGCLCCTVRGDLVRMLSDLVTTKRDKFDHIVIETTGLANPAPIIQTFYAEDKIAEHIKLDGVVTLVDVKNAQRHLEQVKPKGVVNEAVEQIAYADRIILNKIDLVGEAETKALMQKIKRINGMARVKYTKFGVVDMDYVLGIGGFDLDRIEAEVRTETESLSEDHDEHDHHHEHKHDHDHHEHGHDSNGHSHEHDHVHDPGVSSVSIVCDGTLDLTKINIWLGRLLLERSDDIYRMKGLLSVAGFNERYVFQGVHDLFHGSPDRAWGSDEKRTNKIIFIGKNLDEEALQKGFRECLH*

Protein Length: 454

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATAATTTTTTTTGGGAGACACAGCATCATTCGGACAAACGGGCACTTCTCCATTTCGTGGGTCTTACTCGCAACCGACCAATTCTATAAAGACCGTATAGATAATGCTCTATCTGCCATTATCCCTGCACCACTAGAAATGTTTGAGATTTAGAGTTCTTTACAAATTTTCTAATCGCCCAGTCACCAAATCCAGTGCTTCATCCACTTCACAGTCGGCTCTA_-_ATGGCTGGAATGGCGATGGACTTGAGCGCACACTTCGCGAAATTGTCAGCACAACCCATCACATCGAATTCCAATCAGAGTGTTCTTTTCCATGCAACAAGGAGCTGGAACTTCAAATGCCCTTCGAGCCCTGGGGCGCCTCTTAGACTGAGAACGTCAAGCTGGAGAAAGAAGAGGAATGTCACAGAGTTGAAGAAGAGGTCAACCATGGTCGAAGCCTCCGCTACCACACAGGGCCAAAGTACTGCCGAAGTTGTAACTGAATTCCCTGCTGACACTCGTATTCCTGCTACCATCCTCACGGGTTTCTTAGGTTCAGGCAAGACAACTCTTCTCAACCATATTCTAACCTCTGAACATGGAAAAAGAATTGCAGTGATAGAAAATGAGTATGGTGAAGTAGATATCGATGGATCATTAGTTGCTTCACAGATGAAAGGAGCTGAAGATATTGTAATGCTCAATAATGGTTGTCTCTGCTGTACAGTAAGAGGTGATCTTGTGCGAATGCTTTCAGATTTGGTGACAACAAAGAGAGACAAATTTGATCATATAGTTATCGAAACAACAGGTCTTGCAAATCCTGCACCAATAATTCAGACATTCTATGCTGAAGATAAGATTGCAGAACATATAAAACTTGATGGAGTAGTTACTTTGGTTGATGTAAAAAATGCACAAAGACATCTGGAGCAGGTTAAGCCCAAAGGGGTTGTGAATGAGGCTGTCGAACAAATTGCATATGCTGATCGCATCATACTTAACAAGATTGATTTGGTTGGTGAAGCAGAGACAAAGGCGTTGATGCAAAAGATAAAGCGAATCAATGGAATGGCCCGTGTTAAGTATACCAAGTTTGGTGTTGTTGACATGGACTATGTCCTTGGTATTGGTGGCTTTGACTTGGATAGGATTGAAGCTGAAGTTCGTACAGAAACAGAAAGTTTAAGTGAAGATCATGATGAACATGACCATCATCATGAGCATAAGCATGACCACGATCATCATGAGCATGGGCATGACAGTAACGGGCATAGCCATGAGCATGATCATGTACATGACCCTGGTGTTTCTTCTGTCAGCATTGTTTGTGATGGAACATTAGATCTTACCAAGATAAATATCTGGTTGGGCAGACTGTTGCTGGAACGGAGTGACGATATTTACAGAATGAAGGGCCTGCTTTCTGTTGCTGGATTTAATGAACGATATGTTTTTCAGGGTGTGCATGATCTTTTCCATGGCTCCCCTGACAGAGCATGGGGTTCTGATGAGAAAAGAACAAATAAGATCATATTTATTGGGAAAAACCTAGATGAAGAAGCCTTACAGAAGGGTTTCAGGGAGTGCTTGCATTGA___TCTTATATTTTGAAATTTGGAATGTAGCCTAAAGATTTTTTATCATTAAAAGATGAGCATGCCATTGTAGATGGTGCAGTCCTTATAATAGAATTTATCTAGAGAAGGGTTGAACTTGGAGATGACTTTGCTCATATTCTTATTAGAAATTTGTAGGATGTTAGACCATCAATACAGTGAAATATGAAATGTTGTATGCTGATCCATACAATATTTGTAGCTTTTTCCTTTGTGATCAATGTGAAAATTCTTGCAATGAACGGCCACTTGAGTCTTGGTAAATTGTGCACCTGAAAATTTCCATGCTCTTCATTTAGTTCTAGATCAACCACTTATCATATTCTTACCAAATAAATGTCATCTTCTCATGTACTTAACAGAAATAAATTAAGTTGCCTTGGACAATAC

Fln Alignment:

sp_v1.1_unigene15668___MAGMAMDLSAHFAKLSAQPITSNSNQSVLFHATRSWNFKCPSSPGAPLRLRTSSWRKKRNVTELKKRSTMVEASATTQGQSTAEVVTEFPADTRIPATILTGFLGSGKTTLLNHILTSEHGKRIAVIENEYGEVDIDGSLVASQMKGAEDIVMLNNGCLCCTVRGDLVRMLSDLVTTKRDKFDHIVIETTGLANPAPIIQTFYAEDKIAEHIKLDGVVTLVDVKNAQRHLEQVKPKGVVNEAVEQIAYADRIILNKIDLVGEAETKALMQKIKRINGMARVKYTKFGVVDMDYVLGIGGFDLDRIEAEVRTETESLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHDPGVSSVSIVCDGTLDLTKINIWLGRLLLERSDDIYRMKGLLSVAGFNERYVFQGVHDLFHGSPDRAWGSDEKRTNKIIFIGKNLDEEALQKGFRECL
B8LLY3_______________MAGMAMDLSTPSVKLVAQPITSNSNQNALFHLIRSWNFRCPSSPGASLRLRTSSWSKKRNVAELKKRSTMVKASATTQGQSTAEVVSQFPADTRIPATILTGFLGSGKTTLLNHILTSEHGKRIAVIENEYGEVDIDGSLVASQMTGAEDIVMLNNGCLCCTVRGDLVRMLSELVKTKIDKFDHIVIETTGLANPAPIIQTFYAEDKIADHIKLDGVVTLVDVKNAKRHLEQVKPKGVVNEAVEQIAYADRIILNKIDLVGEAETKALMQKIKRINGMARVKYTKFGVVDMDYVLGIGGFDLDRIETEVR--TESLSEDHDEHDHHHEHKHDHDHHEHGHDSDGHSHEHDHVHDPGVSSVSIVCDGTLNLTKINTWLGELLLERSDDIYRMKGLLSVDGFNERYVFQGVHDLFHGSPDRVWGPDEKRTNKIIFIGKNLDEEALQKGFRECL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
604	87		12		0.992554
605	87		12		0.992554
632	87		12		0.992554
660	10		90		0.90298
760		10		90	0.90298
856	90		10		0.90298
1172	80		20		0.995493
1210	80		20		0.995493
1328		83		16	0.994512
1626		28	71		1.0
1629	57	42			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain