SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15666

Length: 1904 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15666

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase, putative n=1 Tax=Ricinus communis RepID=B9T4F7_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	glycosyl hydrolase family 1 protein	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Amygdalin beta-glucosidase.	EC:3.2.1.117	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Cyanoamino acid metabolism	00460		0.0	82%
Blast2go	Beta-mannosidase.	EC:3.2.1.25	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Other glycan degradation	00511		0.0	82%
Blast2go	Beta-glucosidase.	EC:3.2.1.21	-	0.0	82%

Source	KEGGs	Term	Identity
Blast2go	Cyanoamino acid metabolism	00460	82%
Blast2go	Starch and sucrose metabolism	00500	82%
Blast2go	Phenylpropanoid biosynthesis	00940	82%
Blast2go	Biosynthesis of secondary metabolites	01110	82%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	82%
Blast2go	cellobiose glucosidase activity	GO:0080079	Molecular Function	82%
Blast2go	cation binding	GO:0043169	Molecular Function	82%
Blast2go	amygdalin beta-glucosidase activity	GO:0047668	Molecular Function	82%
Blast2go	beta-mannosidase activity	GO:0004567	Molecular Function	82%
Blast2go	esculin beta-glucosidase activity	GO:0080082	Molecular Function	82%
Blast2go	4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase activity	GO:0080081	Molecular Function	82%
Blast2go	beta-glucosidase activity	GO:0008422	Molecular Function	82%
Blast2go	beta-gentiobiose beta-glucosidase activity	GO:0080083	Molecular Function	82%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	82%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	82%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ09

Fln msg:

Fln protein: MEMGTMIVFLFLYINLCMAEQFVWQPGQEIDTSGLSRASFPKGFVFGTATSAYQVEGAAKSDGRGPSIWDTFISQPGIVANNATADVSVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAYYMYDPKQPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGIYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLHDTVRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLLQRH*

Protein Length: 507

Fln nts: ATGGGGGAACACTTCACATTCACCAGCGACTGGTCCCGCACCTTCTCCTTACCAGCCAAAAATAAAAGATTGCGAGAAGCTAGTGCCATGTGAAAGATAGCCTTGGAATCTTACGAGGCTACCTGAGGATGTTGCCTTTTGCTATATAAATAGGGCTGAGCCTACTCAAGATCTTAAGCTGAAGCTCAGAGTGTGAGCTAAGTGACCGAA_-_ATGGAGATGGGAACGATGATTGTCTTTCTTTTCCTTTATATAAATCTCTGCATGGCTGAGCAATTTGTATGGCAGCCAGGTCAAGAGATCGACACTAGCGGGCTGAGTAGAGCCAGTTTTCCCAAGGGTTTTGTGTTCGGAACGGCGACTTCGGCTTACCAGGTGGAAGGAGCTGCCAAGTCCGATGGACGAGGGCCGAGCATTTGGGATACTTTTATCAGTCAACCAGGGATTGTAGCTAACAATGCCACTGCCGATGTTTCGGTGGATGAATACCATCTCTACAAGAGCGATGTAGAGTTGATGGTAAAGATGAACATGGATGCCTACCGTTTCTCGATATCCTGGTCCAGGATTTTTCCAAAAGGAGCAGGTCGGATCAATTACAAGGGTGTCCAATATTACAATAATCTCATTAACTACCTGCTTAAAAGAGGTATCACGCCCTATGCAAATCTTTATCACTATGATTTACCCGAAGCCCTTGAAACAGCCTATGGAGGGTTGCTGAATTCTAGAGTTGTTGAGGACTATGCAAAATTTGCAGAGTTCTGCTTCAAAACCTTTGGTGACAGGGTGAAATACTGGATGACATTCAATGAGCCACGGGTTGTTGCTGCTCTTGGTTATGACAATGGCATTTTTGCTCCTGGAAGGTGCTCTGCTCCATTTGGGAACTGTACAGCAGGAAATTCTGCGACAGAACCCTACATTGTTGCACACAATTTGCTGCTTTCACATGCTACTGCTGTAAAAATTTATAGAGAAAAGTATCAGCCCATGCAAAAGGGAAAAATTGGGATACTTTTGGACTTTGTATGGTATGAGCCTCTTACAAATTCCAGTGAGGACCAGGGAGCGGCTCAAAGATCAAGGGATTTCCATATTGGATGGTTTCTCCATCCTATTACCTATGGGAAATATCCTGATTCTATGGTGGAAATTGTTGGGACAAGACTGCCCATGTTTACAAAGGAACAGTCTCAAATGGTTAAAGGTTCAATAGACTTTCTAGGCGTTAACCAATACACTGCTTATTACATGTATGATCCTAAACAACCTAAACAAAATGTAACAGACTACCAGATGGACTGGAATACAGGCTTTGCATATGCTCGCAATGGAGTGCCTATTGGACCAAGGGCGAACTCCAATTGGCTTTACATTGTGCCTTGGGGTATATACAAGGCCGTCACATACGTAAAAGAACACTATGGAAATCCAACTATGATTCTCTCTGAAAATGGAATGGATGACCCTGGAAACGTGACACTTCCAGCAGGACTGCATGATACCGTCAGGGTTAACTACTATAAAAGCTATTTGCAAAATTTGATTAATGCAGTGAATGACGGGGCAAATGTGGTGGGATACTTTGCATGGTCTTTGCTGGATAATTTTGAGTGGAAGTCCGGATACACCTCAAGGTTTGGAGTGGTTTATGTGGATTTTACTACTCTGAAGCGATATCCAAAGATGTCAGCTTATTGGTTCTCTAAACTCCTCCAACGTCACTAG___TCACCCAACTCTGCTGCAAGTGGTAGCACTAGTTATGTGTAATATCTCCGGACTGAGAAGCTATAATATGCAAGTCCCACCATCCATTTTAAAATATAAAATAATAATAAATGATTTCAGAGTATGGATCTGTGGGAAAAGACTTCTCAAAAGCTCTCTTTGCACATAAATTGGGA

Fln Alignment:

sp_v1.1_unigene15666___MEMGTMIVFLFLYINLCMAEQFVWQPGQEIDTSGLSRASFPKGFVFGTATSAYQVEGAAKSDGRGPSIWDTFISQPGIVANNATADVSVDEYHLYKSDVELMVKMNMDAYRFSISWSRIFPKGAGRINYKGVQYYNNLINYLLKRGITPYANLYHYDLPEALETAYGGLLNSRVVEDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPMQKGKIGILLDFVWYEPLTNSSEDQGAAQRSRDFHIGWFLHPITYGKYPDSMVEIVGTRLPMFTKEQSQMVKGSIDFLGVNQYTAYYMYDPKQPKQNVTDYQMDWNTGFAYARNGVPIGPRANSNWLYIVPWGIYKAVTYVKEHYGNPTMILSENGMDDPGNVTLPAGLHDTVRVNYYKSYLQNLINAVNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTTLKRYPKMSAYWFSKLLQRH
B8LQ09_______________METGTMILFFFLCLNLCNAEPFVWQAGQEIDTGGLSRASFPKGFVFGTATSAYQVEGAAKTDGRGPSIWDTFILQPGIIANNATADVSVDEYHRYKTDVELMVKMNMDAYRFSISWSRIFPKGAGQINYKGVQYYNNLINYLLKRGITPYANLYHYDLPQGLETAYGGLLNSKVVDDYAKFAEFCFKTFGDRVKYWMTFNEPRVVAALGYDNGIFAPGRCSAPFGNCTAGNSATEPYIVAHNLLLSHATAVKIYREKYQPIQKGKIGILLDFVWYEPLTNSSEDQAAAQRSRDFHIGWFLHPIVYGKYPDSMVEIVGKRLPKFTKEQYQMVKGSIDYLGVNQYTAYYMYDPKQPKQNVTGYQMDWNVGFAYARNGVPIGPKANSYWLYIVPWGLYKAVTYIKEHYGNPTMILSENGMDDPGNVTLPAGLHDTTRVNYYKSYLQNLIGAMNDGANVVGYFAWSLLDNFEWKSGYTSRFGVVYVDFTNLKRYPKMSAYWFSKLLQRH

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
999	75			12	0.975346
1293	92		7		0.999664
1563	88		11		0.999952
1624	10		90		0.999898
1711			45	54	1.0
1777	60	39			1.0
1790		38	61		1.0
1794		59		40	1.0
1823	6			93	0.999364

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain