SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15661

Length: 1054 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15661

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cl25046_1a; LOC100216896; K02955 small subunit ribosomal protein S14e	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	40s ribosomal protein s14	-	-	96%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	96%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	96%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	96%
Blast2go	ribosome	GO:0005840	Cellular Component	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein S11	IPR001971	-	0.0	96%
Blast2go	Ribosomal S11, conserved site	IPR018102	-	0.0	96%

Full-Lengther Next Prediction

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
67		83	16		0.994512
76	83		16		0.994512
309	66		33		0.997452
311		33		66	0.997452
317	66	33			0.997452
322	66		33		0.997452
327		33		66	0.997452
329		33		66	0.997452
330	33		66		0.997452
356	25			75	0.996473
357		25		75	0.996473
358	75	25			0.996473
359		75		25	0.996473
365			75	25	0.996473
372		12	87		0.992554
375		12		87	0.992554
376	87		12		0.992554
377	87			12	0.992554
379		12	87		0.992554
383	87		12		0.992554
384		12		87	0.992554
385	87			12	0.992554
387	87			12	0.992554
388		12	87		0.992554
391			87	12	0.992554
504			11	88	0.923564
505	88			11	0.923564
506	88	11			0.923564
508	88			11	0.923564
509		88	11		0.923564
510	11			88	0.923564
514			88	11	0.923564
521			88	11	0.923564
522	88	11			0.923564
523	11		88		0.923564
525	88			11	0.923564
865		22		77	1.0
891		71		28	1.0
950			12	87	0.992554
958	16			83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain