SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15658

Length: 1285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15658

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arginine/serine-rich-splicing factor, putative; K12897 transformer-2 protein	-	-	2.0e-37	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	protein	-	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	80%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A7Z8

Fln msg:

Fln protein: MVDTPRRRYSRSPSPRRRYVRSRSRSRSRSASQSRSPYRSRSPVRRDISSRDDVSNPGNNLYVTGLSARVVEADLEELFSQEGKVVDCRIVVDPRSRESRGFGFVTMDSLENAERCVKYLNRSTLEGRIITVEKAKRKRARTPTPGSYLGVRATVRPRSYGRHRDNHSSRRSPQYSPYRGSRERDYDRDRSPYYSGPSYRRERSRSPEYSPYRR*

Protein Length: 216

Fln nts: ATCACCACCCTAGAAAGAGGCCAATGCTCATTCTCCCTATCGGGCTCAAAACAAAATTACTATATTAATCGAGATTTGCGGAAGAAGAAGAGAAGTTGCAGAGGGTTTGAAGAAAATACACTGCCCAACACAAAACGGTTGGCATTCGAAAGCAGCAAATCTTAACCAACGACTGGCA_-_ATGGTGGACACTCCTAGACGAAGATATTCACGTTCTCCTTCCCCGAGGCGCAGATATGTGCGATCTCGTTCTCGTTCGCGTTCTAGGTCGGCATCTCAGTCTCGATCCCCGTATCGGTCTCGTAGTCCTGTGAGGAGGGATATTTCTTCGAGGGATGATGTGAGTAACCCTGGGAACAACTTATATGTTACTGGACTCTCTGCTCGTGTTGTAGAGGCTGATCTCGAAGAACTCTTTTCCCAAGAAGGCAAGGTAGTTGATTGCCGGATTGTGGTTGATCCAAGATCTCGTGAATCAAGAGGCTTTGGATTTGTGACCATGGATAGTTTAGAGAATGCTGAGCGCTGTGTCAAGTACTTGAACAGATCTACGCTTGAAGGGCGTATCATCACAGTTGAGAAGGCAAAGCGAAAGCGAGCAAGGACACCAACACCTGGTTCTTACCTTGGCGTACGGGCTACGGTTCGGCCACGGTCCTATGGGAGACACAGAGACAACCACAGCTCACGTCGATCACCTCAGTATTCACCATATCGTGGAAGTCGAGAACGGGATTATGATAGAGATCGTTCACCTTACTACTCAGGGCCTAGTTATCGCCGGGAAAGGTCAAGGTCTCCGGAGTACTCACCTTATAGGCGATAG___TGCATCCTGATTTTCCGCGAGTTTTATGAGTGAAACACAATACATATAATATTCTGGTTTGAGTGCTTTTCCATGTGGAGTTATGGATAGTTTTAAAGTAATAGAGTTTTAGTTCAAGTATGATATCTTTTTAGCTTGAAGACATTTTTAAGAGCTTGATTACTAACTGCTGACCCAGAGGTTAGTGGTTTGTCTAAATTGTTTGGTTCAAAATGCGGCCTTGGAATACCTCTAAATAAAGAATATTAAACAGTGAGTCATGACACCAAGGAGGACCATGAAAATAACCTGAATTTCTAATATCATATTTTGTAGCAGTTAGAGGGGAACATTTTCCACTACATTTTATTGTTCTTGGTCATTTGTGCAGTAAATATTGAATCTCCTAGACTAATGTGCATTTTGAGTATTGATGGCGGCGTTCTGATTCACTTTGTTATGGGTTTTTTGATAATTAAAATC

Fln Alignment:

sp_v1.1_unigene15658___DISSRDDVSNPGNNLYVTGLSARVVEADLEELFSQEGKVVDCRIVVDPRSRESRGFGFVTMDSLENAERCVKYLNRSTLEGRIITVEKAKRKRARTPTPGSYLGVRATVRPRSYGRHRDNHXXXXXXXXXXXXXXXERDYDRD
D5A7Z8_______________DISSRNDVSNPGNNLYVTGLSARVVEADLEELFSQEGKVVDCRIVVDPRSRESRGFGFVTMDTLENADRCVKYLNRSTLEGRIITVEKAKRKRARTPTPGSYLGVRATVRPRSYGRHRDG-SSRRSPQYSPYRGSRERDYDRD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
584	80		20		0.995493
841			91	8	0.999766
851		9		90	0.999842
881			90	9	0.999842
899		9	90		0.999842
1229			90	10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain