SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15643

Length: 1424 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15643

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	V-type proton ATPase 16 kDa proteolipid subunit c1/c3/c5 n=77 Tax=Embryophyta RepID=VATL1_ARATH	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	vacuolar atp synthase proteolipid subunit	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	98%
Blast2go	hydrogen ion transmembrane transporter activity	GO:0015078	Molecular Function	98%
Blast2go	ATPase activity	GO:0016887	Molecular Function	98%
Blast2go	integral to membrane	GO:0016021	Cellular Component	98%
Blast2go	vacuolar proton-transporting V-type ATPase, V0 domain	GO:0000220	Cellular Component	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUI8

Fln msg:

Fln protein: MADPFSGDELAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD*

Protein Length: 167

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGCGACCCTCCCCTACCTTGGGAAAGGCCAGAAGCTCTACCTCCGGGTGCGTTGACGTGACCACCCGTTTGTATTACAAAGTCCTCACTAGCTACCCTTCCGCAGTCCGTGCAACTCGAAGAACCGGTAGATTGCTCGGATAAAGGCGGTCTGCGGTTCTCTCCACTAGGAATTCCATTCCGTTTGTGCCCTGGGTACGTCTCTATATACCTTCTTTCTCCCTTCGTCTCCAAGGGATAGTAAAGATCGACGGATTTAGTGTTCTCTTTTTTCTGTTCTCTCCGCGAGGAATTCCATTCCGTTTGTGCCCTGGGTACGTCTCTATATACCTTCTTTCTCCCTTCGTCTCCAAGGGATAGTAAAGATCGACGGATTGAGTGTTCTCTTTTTTCACCTTAATACTCTGCTTCCATCTTCCCGCGAGATCATTTAATCCACGAATTGCATTTAAAAGGTTGATTTCATTTGAAAGATCGGCAGATCATCAGCGTAGACGAA_-_ATGGCGGACCCATTCAGCGGAGACGAGCTAGCACCTTTTTTCGGATTCCTTGGAGCTGCGGCAGCCCTTGTTTTCTCATGCATGGGGGCAGCTTATGGGACGGCAAAGAGTGGAGTTGGAGTTGCATCCATGGGTGTTATGAGGCCAGAACTTGTGATGAAATCTATAGTACCAGTTGTTATGGCCGGAGTGTTGGGTATATATGGTTTGATCATTGCAGTTATTATAAGTACCGGAATCAACCCGAAGGCTAAATCCTATTATTTATTTGATGGATATGCCCACTTATCATCAGGGCTAGCTTGTGGTCTTTCTGGTTTGTCTGCAGGAATGGCAATTGGCATCGTGGGTGATGCTGGTGTCAGAGCAAATGCCCAGCAGCCTAAGCTTTTTGTGGGCATGATCCTCATACTCATTTTTGCAGAGGCGCTTGCCCTGTACGGTTTGATTGTGGGTATTATTTTATCATCCCGAGCTGGTCAGTCAAGAGCTGACTGA___TAGAAGTTTATAATGCCAGGTCACTTGATTGATTGGGGGTTCATTTAAAAAGAACCCTATGTTTCAGAAATTTCATCGCAGTGACTGGATATCTTTTGTATAATTTTTAGTCCTTTAAAATTTCTGTCAACTTAGTACGAAGCATTTTTTCATTGTAGCTTTGTTGTTGAATATCATAAGTTATTGATGGTTGTGAATATAGTCACCTTCATAAATCCAAGGCGATGCTTGGTTTAATGTTCATTCAGAAATGTGGATGTTGCAAGTCCATTCCATTTTATAGTACATGTTCAAATTCCGCCCTACGAGGTTAATAAGATCAACTGCACTGAATTAGTCTTTGTATTAACCTAATTTTTTATATGATACATGTTAGCGCATTTAGCTCTATTGTACAGTTT

Fln Alignment:

sp_v1.1_unigene15643___MADPFSGDEXXXXXXXXXXXXXXVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXXXIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD
A9NUI8_______________MADAFSGDEMAPFFGFMGAAAALVFSCMGAAYGTAKSGVGVASMGVMKPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLSGLSAGMAIGVVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
719			87	12	0.992554
1361			10	90	0.90298
1362		10		90	0.90298
1366		87	12		0.992554
1367	12			87	0.992554
1368			12	87	0.992554
1374		37		62	1.0
1377	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain