SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15633

Length: 1962 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene15633
ATGGGGAACACATACATTCATATGAGCCATCTGCAAACTTGGTTGTTTGTTTGAGGTTTTGCTGCAGGTGAACATTAATATGGAAGGCCAAATTGCAGCATTAAGCAAAGAAGATGAGTTCATTTTTCACAGCCCTTTTCCTGCAGTATCTGTTCCAGAGAATATAAGTCTTCCCCAGTTTGTTCTGGAAGGTGCTGAGAAATACAGTGATAAGGTGGCCCTAGTGGAGGCCTCCACTGGCAAGGAGTACAACTATGGTCAGGTGATTTCGCTCACAAGGAATGTTGCAGCCGGGCTCGTAGACAAAGGCATTCAAAAGGGCGATGTGGTATTTGTTCTGCTTCCAAATATGGCAGAATACCCCATTATTGTGCTGGGAATAATGTTGGCCGGGGCAGTGTTTTCTGGGGCAAATCCTTCTGCACACATCAATGAAGTTGAAAAACATATCCAGGATTCTGGGGCAAAGATTGTTGTGACAGTTGGGTCTGCTTATGAGAAGGTGAGGCAAGTGAGACTGCCTGTTATTATTGCAGATAACGAACATATCATGAATACAATTCCATTGCAGGAAATCTTTGAGAGAAATTATGAAGCCGCAGGGCCTTTTGTACAAATTTGTCAGGATGATCTGTGTGCACTCCCTTATTCTTCTGGCACCACCGGGGCCTCAAAAGGTGTCATGCTCACTCACAGAAATCTGATTGCAAATCTGTCCTCTAGCTTGTTTGATGTCCATGAATCTCTTGTAGGAAGTTTCACCACGTTGGGGCTGATGCCATTATTTCACATATATGGCATCACGGGCATCTGTTGCGCCACTCTTCGCAACAGAGGCAAGGTCGTGGTCATGTCCAGATTCGATCTCCGACACTTTATCAGTTCTTTGATTACTTATGAGGTCAACTTCGCGCCTATTGTCCCGCCCATAATGCTCTCCCTCGTTAAAAATCCTATTGTTAACGAGTTCGATCTCAGCCTCTTGAAACTTAAAGCTGTCATGACTGCAGCTGCTCCACTGGCCCCGGATGTACTGCGAGCGTTCGAGGAAAAATTCCCTGGCGTTGAGGTTCAAGAGGCCTATGGTCTTACGGAACACAGTTGCATCACATTGACTCATTGCGCTCCCGGAAACATACGTGGGAGAGCCAAGAAGGGTTCGGTTGGTTTTATTATTCCCAATCTGGAGGTGAAGTTTATTGATCCTGAAACTGGAAAGTCATTGCCCAGGAATTCCATCGGGGAGGTGTGCGTCAGAAGCCAATGTGTCATGCGAGGGTATTACAAAAAACCGACAGAAACCGAGAAAACAGTGGACAGCGACGGCTGGCTGCATACTGGGGATGTCGGTTTCATAGATGACGACGACGACGTATTCATCGTCGACAGAATTAAAGAGCTGATCAAATACAAAGGTTTTCAGGTTGCTCCCGCAGAGCTGGAAGCCATTCTACTTTCTCATCCATCCGTGGAAGACGCAGCAGTGGTTCCTTTACCTGATGAGGAAGCAGGGGAGATTCCAGCGGCGTGCGTGGTGATGGCAGCCAGTGCTACGGAGACGGAGGACGACATTTCAAAGTTTGTGGCGTCGCAGGTGGCCACATACAAGAGGGTGAGACTGGTGAAGTTTGTGTCCACCATTCCTAAATCTTCTTCCGGAAAGATCCTTCGCAGACTTCTGCGAGATAATCTCTGTGAAACACTCAAAAACCAGCGCCAACCATTGTCCACTTAGGCTTTGCAGCGTTATATATAAATAAATCAAACGTTCTAGGGATGGGATTATAGCCCCATAGCATACATTTTGAAATTACCAGAGCAAACTTGTCTAGTGTAGTTTGTTACAGGCACTCCTCGCCTTACTTTGAACATAATATATACAGATCTCTCTACTGAGGTTCATTTTATTGCAGCAAGCGGTGCTGAACATTTTAATTGATTTCGATTCGCTTCGTATCGATG

Ace file of the UniGene sp_v1.1_unigene15633

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ACLL14; acyl:coa ligase (EC:6.2.1.12); K01904 4-coumarate--CoA ligase [EC:6.2.1.12]	-	-	63%
FL-Next	tr=4-coumarate:CoA ligase; Pinus massoniana.	-	-	40%
Blast2go	acyl:coa ligase	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Fatty acid metabolism	00071		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	4-coumarate--CoA ligase.	EC:6.2.1.12	-	76%

Source	KEGGs	Term	Identity
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	76%
Blast2go	Phenylalanine metabolism	00360	76%
Blast2go	Phenylpropanoid biosynthesis	00940	76%
Blast2go	Biosynthesis of phenylpropanoids	01061	76%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	76%
Blast2go	Metabolic pathways	01100	76%
Blast2go	Biosynthesis of secondary metabolites	01110	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	4-coumarate--CoA ligase.	EC:6.2.1.12	-	0.0	63%

Source	KEGGs	Term	Identity
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	63%
AutoFact	Phenylalanine metabolism	00360	63%
AutoFact	Phenylpropanoid biosynthesis	00940	63%
AutoFact	Biosynthesis of phenylpropanoids	01061	63%
AutoFact	Biosynthesis of alkaloids derived from shikimate pathway	01063	63%
AutoFact	Metabolic pathways	01100	63%
AutoFact	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	Identity
Blast2go	fatty-acyl-CoA biosynthetic process	GO:0046949	Biological Process	76%
Blast2go	sporopollenin biosynthetic process	GO:0080110	Biological Process	76%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	76%
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	76%
Blast2go	4-coumarate-CoA ligase activity	GO:0016207	Molecular Function	76%
Blast2go	medium-chain fatty acid-CoA ligase activity	GO:0031956	Molecular Function	76%
Blast2go	cytoplasm	GO:0005737	Cellular Component	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	0.0	76%
Blast2go	AMP-binding, conserved site	IPR020845	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C1KBY2

Fln msg:

Fln protein: MEGQIAALSKEDEFIFHSPFPAVSVPENISLPQFVLEGAEKYSDKVALVEASTGKEYNYGQVISLTRNVAAGLVDKGIQKGDVVFVLLPNMAEYPIIVLGIMLAGAVFSGANPSAHINEVEKHIQDSGAKIVVTVGSAYEKVRQVRLPVIIADNEHIMNTIPLQEIFERNYEAAGPFVQICQDDLCALPYSSGTTGASKGVMLTHRNLIANLSSSLFDVHESLVGSFTTLGLMPLFHIYGITGICCATLRNRGKVVVMSRFDLRHFISSLITYEVNFAPIVPPIMLSLVKNPIVNEFDLSLLKLKAVMTAAAPLAPDVLRAFEEKFPGVEVQEAYGLTEHSCITLTHCAPGNIRGRAKKGSVGFIIPNLEVKFIDPETGKSLPRNSIGEVCVRSQCVMRGYYKKPTETEKTVDSDGWLHTGDVGFIDDDDDVFIVDRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAACVVMAASATETEDDISKFVASQVATYKRVRLVKFVSTIPKSSSGKILRRLLRDNLCETLKNQRQPLST*

Protein Length: 553

Fln nts: ATGGGGAACACATACATTCATATGAGCCATCTGCAAACTTGGTTGTTTGTTTGAGGTTTTGCTGCAGGTGAACATTAAT_-_ATGGAAGGCCAAATTGCAGCATTAAGCAAAGAAGATGAGTTCATTTTTCACAGCCCTTTTCCTGCAGTATCTGTTCCAGAGAATATAAGTCTTCCCCAGTTTGTTCTGGAAGGTGCTGAGAAATACAGTGATAAGGTGGCCCTAGTGGAGGCCTCCACTGGCAAGGAGTACAACTATGGTCAGGTGATTTCGCTCACAAGGAATGTTGCAGCCGGGCTCGTAGACAAAGGCATTCAAAAGGGCGATGTGGTATTTGTTCTGCTTCCAAATATGGCAGAATACCCCATTATTGTGCTGGGAATAATGTTGGCCGGGGCAGTGTTTTCTGGGGCAAATCCTTCTGCACACATCAATGAAGTTGAAAAACATATCCAGGATTCTGGGGCAAAGATTGTTGTGACAGTTGGGTCTGCTTATGAGAAGGTGAGGCAAGTGAGACTGCCTGTTATTATTGCAGATAACGAACATATCATGAATACAATTCCATTGCAGGAAATCTTTGAGAGAAATTATGAAGCCGCAGGGCCTTTTGTACAAATTTGTCAGGATGATCTGTGTGCACTCCCTTATTCTTCTGGCACCACCGGGGCCTCAAAAGGTGTCATGCTCACTCACAGAAATCTGATTGCAAATCTGTCCTCTAGCTTGTTTGATGTCCATGAATCTCTTGTAGGAAGTTTCACCACGTTGGGGCTGATGCCATTATTTCACATATATGGCATCACGGGCATCTGTTGCGCCACTCTTCGCAACAGAGGCAAGGTCGTGGTCATGTCCAGATTCGATCTCCGACACTTTATCAGTTCTTTGATTACTTATGAGGTCAACTTCGCGCCTATTGTCCCGCCCATAATGCTCTCCCTCGTTAAAAATCCTATTGTTAACGAGTTCGATCTCAGCCTCTTGAAACTTAAAGCTGTCATGACTGCAGCTGCTCCACTGGCCCCGGATGTACTGCGAGCGTTCGAGGAAAAATTCCCTGGCGTTGAGGTTCAAGAGGCCTATGGTCTTACGGAACACAGTTGCATCACATTGACTCATTGCGCTCCCGGAAACATACGTGGGAGAGCCAAGAAGGGTTCGGTTGGTTTTATTATTCCCAATCTGGAGGTGAAGTTTATTGATCCTGAAACTGGAAAGTCATTGCCCAGGAATTCCATCGGGGAGGTGTGCGTCAGAAGCCAATGTGTCATGCGAGGGTATTACAAAAAACCGACAGAAACCGAGAAAACAGTGGACAGCGACGGCTGGCTGCATACTGGGGATGTCGGTTTCATAGATGACGACGACGACGTATTCATCGTCGACAGAATTAAAGAGCTGATCAAATACAAAGGTTTTCAGGTTGCTCCCGCAGAGCTGGAAGCCATTCTACTTTCTCATCCATCCGTGGAAGACGCAGCAGTGGTTCCTTTACCTGATGAGGAAGCAGGGGAGATTCCAGCGGCGTGCGTGGTGATGGCAGCCAGTGCTACGGAGACGGAGGACGACATTTCAAAGTTTGTGGCGTCGCAGGTGGCCACATACAAGAGGGTGAGACTGGTGAAGTTTGTGTCCACCATTCCTAAATCTTCTTCCGGAAAGATCCTTCGCAGACTTCTGCGAGATAATCTCTGTGAAACACTCAAAAACCAGCGCCAACCATTGTCCACTTAG___GCTTTGCAGCGTTATATATAAATAAATCAAACGTTCTAGGGATGGGATTATAGCCCCATAGCATACATTTTGAAATTACCAGAGCAAACTTGTCTAGTGTAGTTTGTTACAGGCACTCCTCGCCTTACTTTGAACATAATATATACAGATCTCTCTACTGAGGTTCATTTTATTGCAGCAAGCGGTGCTGAACATTTTAATTGATTTCGATTCGCTTCGTATCGATG

Fln Alignment:

sp_v1.1_unigene15633___KEDEFIFHSPFPAVSVPENISLPQFVLEGAEKYSDKVALVEASTGKEYNYGQVISLTRNVAAGLVDKGIQKGDVVFVLLPNMAEYPIIVLGIMLAGAVFSGANPSAHINEVEKHIQDSGAKIVVTVGSAYEKVRQVR---LPVIIADNEHIMNTIPLQEIFERNYEAAGPFVQICQDDLCALPYSSGTTGASKGVMLTHRNLIANLSSSLFDVHESLV--GSFTTLGLMPLFHIYGITGICCATLRNRGKVVVMSRFDLRHFISSLITYEVNFAPIVPPIMLSLVKNPIVNEFDLSLLKLKAVMTAAAPLAPDVLRAFEEKFPGVEVQEAYGLTEHSCITLTHCAPGNIRGRAKKGSVGFIIPNLEVKFIDPETGKSLPRNSIGEVCVRSQCVMRGYYKKPTETEKTVDSDGWLHTXXXXXXXXXXXXXXXXRIKELIKYKGFQVAPAELEAILLSHPSVEDAAVVPLPDEEAGEIPAACVVMAASATETEDDISKFVASQVATYKRVRLVKFVSTIPKSSSGKILRRLLRDNL
C1KBY2_______________KKVEHLYRSKLPDIEISDHLPLHSYCFERVAEFADRPCLIDGATDRTYSFSEVELISRKVAAGLAKLGLQQGQVVMLLLPNCIEFAFVFMGASVRGAIVTTANPFYKPGEIAKQAKAAGARIIVTLAAYVEKLADLQSHDVLVITIDDAPKEGCQHISVLTEAD-ETQCPAVKIHPDDVVALPYSSGTTGLPKGVMLTHKGLVSSVAQQVDGENPNLYFHSEDVILCVLPLFHIYSLNSVLLCALRAGAATLIMQKFNLTTCLELIQKYKVTVAPIVPPIVLDITKSPIVSQYDVSSVRI--IMSGAAPLGKELEDALRERFPKAIFGQGYGMTEAGPVLAMNLAFAKNPFPVKSGSCGTVVRNAQIKILDTETGESLPHNQAGEICIRGPEIMKGYINDPESTAATIDEEGWLHTGDVGYIDDDEEIFIVDRVKEIIKYKGFQVAPAELEALLVAHPSIADAAVVPQKHEETGEVPVAFVVKSSEISEQE--IKEFVAKQVVFYKKIHRVYFVDAIPKSPSGKILRKDLRSRL

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1468	8	91			0.999807
1585		11	88		1.0
1885	31			68	1.0
1889	35			64	1.0
1890	35	64			1.0
1930	33			66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1361	1373	GAC GAC GAC GAC G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain