SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15627

Length: 1553 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15627

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Rab family GTPase n=1 Tax=Selaginella moellendorffii RepID=D8SWR5_SELML	-	-	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	gtp binding protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	protein transport	GO:0015031	Biological Process	88%
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	88%
Blast2go	GTP binding	GO:0005525	Molecular Function	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKR1

Fln msg:

Fln protein: MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCCT*

Protein Length: 202

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGACGTAGGATCCAAGAAAAGGTTTCCATCTAGACCGTCCATACCCTCACAGGGACGACGCACAGGGTGACGTGGAATACCTGGTTCGGCTGACACGTGTCAGAAATGTTCACAGCATGACCGGCTACAAAAGGGACTCATTGATCTCTCAGAAGAATTGAGCTTTTCTTATTGGGGAGCGAGAGGTGAATTCGTTCACAAATCATCGCCTGGTCTGCGGTTGGACTCTTGCGATCACCAAATTGTCAGCTACGGATCTTCGTTCTCACTCCTCTGTTGATCCAAAAGCTGCGGAGTCCGGCAATCTGCAGAGAAAAATTTGAAGAATTTGAGTTTTTGAGCCGGGCAATCTGCAGAGAAAAATTCGAAGAATTTGAGTGCCAGCATCGAATCCCCGGACTGA_-_ATGGCAACCACTGGCACCAATAACATGCAGGCTAAGCTGGTGCTTCTTGGTGATATGGGTACTGGAAAATCGAGCCTTGTTTTGCGATTTGTCAAAGGCCAATTTTTGGATTATCAGGAGTCGACAATTGGAGCAGCATTTTTCTCACAGACACTAGCAGTGAATGAGGTGACTGTAAAATTTGAGATATGGGACACTGCAGGACAGGAAAGATATCATAGCTTGGCGCCCATGTATTATCGTGGTGCTGCAGCAGCTATAATTGTTTATGACATAACAAATTTGGATTCTTTTGTCCGAGCAAAGAATTGGGTGCTGGAGCTCCAAAAACAAGGCAACCCAAATTTGGTTATGGCCCTTGCTGGAAATAAGGCTGATATGGCAGCAAAGAGGAAGGTCGAACCAGAGGAAGCTGAAACATATGCAAAGGAAAATGGTCTATTTTTCATGGAAACCTCAGCAAAGACGGCACAGAATGTCAATGAACTGTTCTATGAAATTGCGCGAAGATTACCTAAAGCCCGACCAGTGCAGCAGCCTGCAGGCATGGTTCTCACAGATAGACCTGCAGAGAGTGCTAAAACTTACTCTTGCTGCACATAA___GCCCTCGATTTCATGTCACTGAAAATTTGAAGATGCCACCTTCAGCTGTATGCAGTTATTCTATGCACATTATTTGCTACGGCTGTGATATCCGGAGGAGATGGTGGGGGGGTTTCAAGCTTTGTTTAGAACTTGCTTTAAGGAATTTTAGCGTTTATGGAGAAATGTAAAAATACATATTTTGGTGCTTAAATTAAATCTCTGTAGTGAGGTGCGATGGTCATTGAAAGCCTTCTGATACAACTCTTTGGTGCCATTTATGATGAGCTTATATTTAAATTGAAAAGCTGTGCTCTGTTTAAATACTCCGAGCTCGGAGAGGGTAGATCTCTTTTGATCCTGCAATGACATCTTGTGTTTGATTGATTGTACTAGACTATACTATGGGACGCTAAACTGTCATTTAAAAATGTGAGACTGTTTGTAACAAAGTCTTGCTATTGATACCTTGCATTGAAACTAATGTTTTCTTGAAGCATGATGAATAAATTGGCTAATAGTGTAGTCGTTCTGAACAAAAAAA

Fln Alignment:

sp_v1.1_unigene15627___MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNLDSFVRAKNWVLELQKQGNPNLVMALAGNKADMAAKRKVEPEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAESAKTYSCCT
A9NKR1_______________MATTGTNNMQAKLVLLGDMGTGKSSLVLRFVKGQFLDYQESTIGAAFFSQTLAVNEVTVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITNSDSFVRAKNWVLELQKQGNPNLVMALAGNKADVAAKRKVEAEEAETYAKENGLFFMETSAKTAQNVNELFYEIARRLPKARPVQQPAGMVLTDRPAERARTYSCCS

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1437			6	93	0.999264
1465	15		84		1.0
1466	15			84	1.0
1467	15	84			1.0
1497	12			87	0.992554
1521	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain