SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15623

Length: 628 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15623 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Defensin-2 n=1 Tax=Pinus sylvestris RepID=DEF2_PINSY	-	-	6.0e-33	79%
FL-Next	sp=Defensin-2; Pinus sylvestris (Scots pine).	-	-	0.0	90%
Blast2go	defensin precursor	-	-	2.79947e-33	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to fungus	GO:0050832	Biological Process	2.79947e-33	79%
Blast2go	killing of cells of other organism	GO:0031640	Biological Process	2.79947e-33	79%
Blast2go	extracellular region	GO:0005576	Cellular Component	2.79947e-33	79%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	2.79947e-33	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Knottin	IPR003614	-	2.79947e-33	79%
Blast2go	Gamma thionin	IPR008176	-	2.79947e-33	79%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
265			66	33	0.997452
266		66		33	0.997452
353	50			50	1.0
371	40		60		1.0
377	71		28		1.0
380	28		71		1.0
383		28	71		1.0
389	71		28		1.0
396		71		28	1.0
505	20		80		1.0
594	13			86	0.999973
616		90	10		0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
237	250	TTA TTA TTA TTA TT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain