SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15599

Length: 1532 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15599

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Snf7 domain containing protein	-	-	9.99967e-42	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	snf7 family protein	-	-	0.0	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein transport	GO:0015031	Biological Process	0.0	90%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	0.0	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND7

Fln msg:

Fln protein: MKRVFGVKKDKDPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDDMMNLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDRESDLDSELNLPSAPFGHTTVPQANPQTTDEFGLPAVPRASLRS*

Protein Length: 237

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGCGTGAGGGTATGGGGATTGAATGGTAGAGGTCCCTGGAGACTATAAATTGCCATAAATCAGATAGAAACGCTTCGTCTGCATCGAGGATTTGACTAATCTTTTCGATTTTTTTCTACTGTTCGTTTGAATCCGTGGGAATTCGATTGCTAATTTCAGTTGGAAGGCCCTATTGCAGATTCAGAACGGAGTTTCCCGAATGATGTGCCAATTTAATTGAATTTTTTCTTGATCGGTTTTAGCCTATTATATTATATACCGGCTGCATTGAAAAAGTGAACTTGGCCGCGGAGACCTGACAGAAGTAGCTCCATTTCTCAGCTCAGATCCGGGGATTCGGTTGAATTCAGCGTATCAGAAAAG_-_ATGAAGCGAGTTTTTGGAGTCAAGAAGGACAAGGATCCTCCTCCATCCGTTCAAGATGCTGCTGAAAGGATCAATAAAAGAGGTGACACAGTTGATGAAAAGGTTAAGAAACTTGATATTGAGCTTGCTAGATACAAAGAACAGATAAAGAAGACCAGGCCAGGTCCTGCTCAAGAGGCTATCAAAGCTCGGGCTATGAGGATACTCAAGCAAAAGAGGATGTATGAGGGACAGAGGGAAATGATTTACAATCAAACATTCAATCTTGATCAGGTTTCCTTTGCCACAGAGGGCATCAAGGATGCTCAGAATACGATGGCAGCCCTGAAATCTGCCAACAAGGAACTGAAAGGATCACTTAAGACAATGAAGATTGAAGACATTGATAATATGCAGGATGACATGATGAACTTAATGGACATAAGTACTGAAATCCAAGACTCACTTGGGAGAAGCTATAGTGTGCCTGATGACATTGACGAGGATGAACTAATGGGTGAGCTAGATGCACTGGAAGCTGACATGGGTTCAGAGACCCAAACTGATGGAGTGCCTGCTTATTTACAACCCGATAGAGAGTCTGATCTAGATTCCGAATTGAACCTGCCTTCAGCACCTTTTGGTCATACCACAGTTCCACAAGCCAATCCACAGACTACCGATGAGTTTGGGCTGCCGGCTGTTCCAAGGGCCTCACTTCGTTCATAA___GCAAGCACATTTTCCAAAACGACCTGTGTATGATATATATCTGGTCTAGTTATCATATGTATTGTGTCTGCACAGTACTGACGATGTCATTTTGTTGCTTGTCATCTGTTTCAATTCAGGGCATCAGTGTTTGTTGAAAGTCTTAGATAAATATATTCAGAGAAAATGTCGAGTGCTTTTATCTTTTTTTGTTTGTTACTTGTATGATATAAGTTTCAAAGTCCCAGATCATATATATGAAGTGTTGTGCTGCTGTTGTAGAATTGGATGTGATTTTGATGCCAATTACAAAGCCTAATATATCTATGGATAATATTTTATGAGTGTAATGTCTTTATTACACTCAGAAAATTGATGTGAATTTTACAGTCTAGGATAAGGGAGACGTGTAATGTCAATGTTAGGTTCTAACACCAATCATGTTGAAAGGCATTG

Fln Alignment:

sp_v1.1_unigene15599___MKRVFGVKKDKDPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEXXXXXXXXXXXXXXXSTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDRESDLDSELNLPSAPFGHTTVPQANPQTTDEFGLPAVPRASLRS
B8LND7_______________MRRVFGVKKDKEPPPSVQDAAERINKRGDTVDEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELNLPSAPSGRATVPQANQQTTDEFGLPTVPRASLRT

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
57	10		90		0.90298
141		14		85	0.993533
168		10		90	0.90298
177		10		90	0.90298
198	90		10		0.90298
374		77		22	1.0
1095		10		90	0.90298
1098			90	10	0.90298
1099	10	90			0.90298
1105	11	88			0.923564
1151		85	14		0.993533
1152	85		14		0.993533
1391	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain