SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15596

Length: 880 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15596 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PTAC18; PTAC18 (PLASTID TRANSCRIPTIONALLY ACTIVE 18)	-	-	7.0e-34	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	like cupin-like protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	plastid chromosome	GO:0009508	Cellular Component	0.0	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF861, cupin-3	IPR008579	-	0.0	72%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
582			33	66	0.997452
583	33			66	0.997452
584			33	66	0.997452
589		66	33		0.997452
592	33	66			0.997452
595		66	33		0.997452
599	33			66	0.997452
601		66	33		0.997452
699		75	24		1.0
710		6	93		0.999998
727		3		96	0.990463
728	3			96	0.990463
731		96	3		0.990463
734		3	96		0.990463
735	3			96	0.990463
740	96	3			0.990463
741		96	3		0.990463
781		4	94		0.967557
782	94	6			0.999998
793		4		95	0.99692
794		2		93	0.985381
804	92	5		2	0.991359
805		5	94		0.997984
806	94	5			0.997984
807		5	2	92	0.992495
815		8	91		1.0
816	2	5	91		0.995208
817	94	5			0.998744
818	3	6	3	87	0.990219
819	13		3	82	1.0
834	7	78			0.999974

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain