SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15594

Length: 1992 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15594
CGTCGTGACCTTGGCTGTCACTCAAATGTCCCACATTTGTTAATCGAGCCTGTCGCATCCTTTCCGTGATATGGAACATGTCTCATGACGTCCTCCACGAGCCCCAACTGAGCACCAGCTTGCAGTGAGCAGTGAGAGGACTATAAATCCACAAACACATGACATGATTATGCGGATACCAGTCTCCCACTCATATATTCATTGTTGTTTTGGCAAGATTGTTGCAGAGTTTTCTGTTAGAAGTTGACTGAGAACAATGGGTTCTCTAGCAGTACCTGAGTCTGCCTTGATAAACCATTTAGATGTTAAGGTAGGGGAACCTGAGATGGTTGTACCGGCTGAACCCACTGAGGAATGTTCTCTTTTTCTATCGAATATTGATCAGGTAGTTGCTTATGTTGTGGATACTGTGTATTTTTACCCGCCTAATGCAGAGGACAAAAATGTTGATGCTGCTGAAATTGTAGGGGGCTTGAAGGAAGCCCTAGGGAAGGTGCTGGTGCCCTACCATTTCATGGCAGGGAGGTTGAAATTGAATCTGGAGAAGGGGAGGATGGAGATTGACTGTAACAGAGCTGGAGCTCTGTTTGCAGCAGCTAATTGTGATCTGTCTTTATCTGATCTGGGCGATATAACTTACCCAAATCCTGTTTTCAGAAGTCTGGTGCTCCAAGGAGCTCATGCTAAGAAGTTTGGGGCTAGTCCTCCTCTGTTAATGATGCAGGTGACTAGATTCAAGTGCGGTGGGATAGTGTTGGGAATGTCAATGAACCATGCTATGTTTGATGGGTTTGGAGCACTGGAATTCATGATGAACTTCTCCTCTATGGCACGAGGCAAGGGGTTGATCACTCATCCTCTCCCAGACCGGACATGTTTCAAAGCAAGGGATATTCCAGAGATCAAATATGAGCATTTGGAGGGGCTGAAATTCAGTGATATCCCACAGGAGATGAGAAATTCCTTCACAACTGCCGACGTAGCAAATTCAGAAATCAGCAACATCTCTCTTCCACCTGAGTATAGTTATAAAGCTTTTCCTTTCAGTGGGGAGATGGTAGAGAAACTAAAGAAAAAGGCCATGGAGGATGGTACTCTGACGAAATGTTCTTCATTCGATGCCATTGCAGCTCTTGTATGGCAGGCTCGAACAAAGGCTGTTGATATGCCTCCTGATGTACCTTCCAAGATGCTTTTTGCTGTGGATCTTCGTTCAAAAATGGATCCTCCACTGCCAAAGGGCTTCGCAGGGAATGCTGTTTTCAGCTCATATTGCATCGAACCAGCAGGGGCAGTGAAGGAGAAGCCATTATCATTCTGTGTGGAGAAAGTGCAGGAAGGGGTGGCCAGAGTCACAAATGACTATGTTCGGTCATCAATGGATTTCACTGAGACATACAAAGCCATTCCAGCATTACCAGGAGGCATATTTCTGTCTGCATGGTGGAAAATACCATTTCAGTTGGTTGATTTTGGATTTGGGAAGCCTATATATGCAGGCCCCATTGTGAACGCCATGGTGGAGTTTGTTCTGCTTCTTTCCAATGGAAAACACGACGGTGGCCTCAACATCTACATTGCCCTCCAAAATCATCAGTTGGACAAATTTGAGCAGCTTATCTATGATATTTAAGTATTTCAATCTCTTTATGCCTTTGAAGAAATAGGATCTCAATGGATAGTGTTGCAATAGCGCGTTATGTCTGTAGTTTTATTTGTTTCAATTTTAGAATTGATTGTGATAATATTTAGTTAATAAAAAAAAGGCTGCCTGTGGCCTCTCTCATTTTTGTACATGACCCGGACCATGCAGACAGGATGTGGAAGTGTTATCACATGGTCTTGTGGAACTGTTCTCACGAAGACCATGTGGAAATGTAAATTGTGTCACAAGATTATGTTCTTTTATTGTGGGACAGCAGTGATAAATAAAGCAGCAAATTTTTTTCTTTATGTGGCATGCAATTATTTAATGAAGAACAGATTCTTTTA

Ace file of the UniGene sp_v1.1_unigene15594

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	transferase family protein	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	bahd family clade v	-	-	63%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Acyltransferases, Transferring groups other than amino-acyl groups.	EC:2.3.1.-	-	0.0	63%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid biosynthesis	00061	63%
Blast2go	Tetracycline biosynthesis	00253	63%
Blast2go	Lysine degradation	00310	63%
Blast2go	Arginine and proline metabolism	00330	63%
Blast2go	Histidine metabolism	00340	63%
Blast2go	Tyrosine metabolism	00350	63%
Blast2go	Benzoate degradation	00362	63%
Blast2go	Lipopolysaccharide biosynthesis	00540	63%
Blast2go	Glycerophospholipid metabolism	00564	63%
Blast2go	Ether lipid metabolism	00565	63%
Blast2go	Glycosphingolipid biosynthesis - ganglio series	00604	63%
Blast2go	Toluene degradation	00623	63%
Blast2go	Naphthalene degradation	00626	63%
Blast2go	Aminobenzoate degradation	00627	63%
Blast2go	Ethylbenzene degradation	00642	63%
Blast2go	Butanoate metabolism	00650	63%
Blast2go	Methane metabolism	00680	63%
Blast2go	Limonene and pinene degradation	00903	63%
Blast2go	Diterpenoid biosynthesis	00904	63%
Blast2go	Carotenoid biosynthesis	00906	63%
Blast2go	Anthocyanin biosynthesis	00942	63%
Blast2go	Stilbenoid, diarylheptanoid and gingerol biosynthesis	00945	63%
Blast2go	Isoquinoline alkaloid biosynthesis	00950	63%
Blast2go	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	63%
Blast2go	Betalain biosynthesis	00965	63%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	63%
Blast2go	Biosynthesis of type II polyketide backbone	01056	63%
Blast2go	Biosynthesis of terpenoids and steroids	01062	63%
Blast2go	Metabolic pathways	01100	63%
Blast2go	Biosynthesis of secondary metabolites	01110	63%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity, transferring acyl groups other than amino-acyl groups	GO:0016747	Molecular Function	0.0	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ1

Fln msg: your sequence is longer than subject: 459 - 241

Fln protein: MGSLAVPESALINHLDVKVGEPEMVVPAEPTEECSLFLSNIDQVVAYVVDTVYFYPPNAEDKNVDAAEIVGGLKEALGKVLVPYHFMAGRLKLNLEKGRMEIDCNRAGALFAAANCDLSLSDLGDITYPNPVFRSLVLQGAHAKKFGASPPLLMMQVTRFKCGGIVLGMSMNHAMFDGFGALEFMMNFSSMARGKGLITHPLPDRTCFKARDIPEIKYEHLEGLKFSDIPQEMRNSFTTADVANSEISNISLPPEYSYKAFPFSGEMVEKLKKKAMEDGTLTKCSSFDAIAALVWQARTKAVDMPPDVPSKMLFAVDLRSKMDPPLPKGFAGNAVFSSYCIEPAGAVKEKPLSFCVEKVQEGVARVTNDYVRSSMDFTETYKAIPALPGGIFLSAWWKIPFQLVDFGFGKPIYAGPIVNAMVEFVLLLSNGKHDGGLNIYIALQNHQLDKFEQLIYDI*

Protein Length: 460

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATGTCCCACATTTGTTAATCGAGCCTGTCGCATCCTTTCCGTGATATGGAACATGTCTCATGACGTCCTCCACGAGCCCCAACTGAGCACCAGCTTGCAGTGAGCAGTGAGAGGACTATAAATCCACAAACACATGACATGATTATGCGGATACCAGTCTCCCACTCATATATTCATTGTTGTTTTGGCAAGATTGTTGCAGAGTTTTCTGTTAGAAGTTGACTGAGAACA_-_ATGGGTTCTCTAGCAGTACCTGAGTCTGCCTTGATAAACCATTTAGATGTTAAGGTAGGGGAACCTGAGATGGTTGTACCGGCTGAACCCACTGAGGAATGTTCTCTTTTTCTATCGAATATTGATCAGGTAGTTGCTTATGTTGTGGATACTGTGTATTTTTACCCGCCTAATGCAGAGGACAAAAATGTTGATGCTGCTGAAATTGTAGGGGGCTTGAAGGAAGCCCTAGGGAAGGTGCTGGTGCCCTACCATTTCATGGCAGGGAGGTTGAAATTGAATCTGGAGAAGGGGAGGATGGAGATTGACTGTAACAGAGCTGGAGCTCTGTTTGCAGCAGCTAATTGTGATCTGTCTTTATCTGATCTGGGCGATATAACTTACCCAAATCCTGTTTTCAGAAGTCTGGTGCTCCAAGGAGCTCATGCTAAGAAGTTTGGGGCTAGTCCTCCTCTGTTAATGATGCAGGTGACTAGATTCAAGTGCGGTGGGATAGTGTTGGGAATGTCAATGAACCATGCTATGTTTGATGGGTTTGGAGCACTGGAATTCATGATGAACTTCTCCTCTATGGCACGAGGCAAGGGGTTGATCACTCATCCTCTCCCAGACCGGACATGTTTCAAAGCAAGGGATATTCCAGAGATCAAATATGAGCATTTGGAGGGGCTGAAATTCAGTGATATCCCACAGGAGATGAGAAATTCCTTCACAACTGCCGACGTAGCAAATTCAGAAATCAGCAACATCTCTCTTCCACCTGAGTATAGTTATAAAGCTTTTCCTTTCAGTGGGGAGATGGTAGAGAAACTAAAGAAAAAGGCCATGGAGGATGGTACTCTGACGAAATGTTCTTCATTCGATGCCATTGCAGCTCTTGTATGGCAGGCTCGAACAAAGGCTGTTGATATGCCTCCTGATGTACCTTCCAAGATGCTTTTTGCTGTGGATCTTCGTTCAAAAATGGATCCTCCACTGCCAAAGGGCTTCGCAGGGAATGCTGTTTTCAGCTCATATTGCATCGAACCAGCAGGGGCAGTGAAGGAGAAGCCATTATCATTCTGTGTGGAGAAAGTGCAGGAAGGGGTGGCCAGAGTCACAAATGACTATGTTCGGTCATCAATGGATTTCACTGAGACATACAAAGCCATTCCAGCATTACCAGGAGGCATATTTCTGTCTGCATGGTGGAAAATACCATTTCAGTTGGTTGATTTTGGATTTGGGAAGCCTATATATGCAGGCCCCATTGTGAACGCCATGGTGGAGTTTGTTCTGCTTCTTTCCAATGGAAAACACGACGGTGGCCTCAACATCTACATTGCCCTCCAAAATCATCAGTTGGACAAATTTGAGCAGCTTATCTATGATATTTAA___GTATTTCAATCTCTTTATGCCTTTGAAGAAATAGGATCTCAATGGATAGTGTTGCAATAGCGCGTTATGTCTGTAGTTTTATTTGTTTCAATTTTAGAATTGATTGTGATAATATTTAGTTAATAAAAAAAAGGCTGCCTGTGGCCTCTCTCATTTTTGTACATGACCCGGACCATGCAGACAGGATGTGGAAGTGTTATCACATGGTCTTGTGGAACTGTTCTCACGAAGACCATGTGGAAATGTAAATTGTGTCACAAGATTATGTTCTTTTATTGTGGGACAGCAGTGATAAATAAAGCAGCAAATTTTTTTCTTTATGTGGCATGCAATTATTTAATGAAGAACAGATTCTTTTA

Fln Alignment:

sp_v1.1_unigene15594___MGSLAVPESALINHLDVKVGEPEMVVPAEPTEECSLFLSNIDQVVAYVVDTVYFYPPNAEDKNVDAAEIVGGLKEALGKVLVPYHFMAGRLKLNLEKGRMEIDCNRAGALFAAANCDLSLSDLGDITYPNPVFRSLVLQGAHAKKFGASPPLLMMQVTRFKCGGIVLGMSMNHAMFDGFGALEFMMNFSSMARGKGLITHPLPDRTCFKARDIPEIKYEHLEGLKFSDIPQEMRNSF
A9NUZ1_______________MGSLAVAESSLITHLDVEVEEPEMVVQAEPTEECSLFLSNIDQVVAYVVDTVYFYTPQGEDKSAASADVVGELKEALGKVLVPYHFMAGRLKLNLEKGRLEIDCNRAGALFAAANCDLNLSDLGDVTYPNPVFRNLVLQGVHARKFGANPPLLMMQVTRFKCGGVVLGMSMNHAMFDGVGAMEFMMNFSSIARGNGLIAYPLPDRTCFKARDIPEIKYEHLEGLKLSDIPQEMRNSF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
173	60	30			1.0
174			10	90	0.90298
177			70	30	1.0
178		30	60	10	1.0
183	20	80			0.999996
184	73	26			1.0
191	26	73			1.0
194	73			26	1.0
195		73		26	1.0
196			26	73	1.0
197		73	26		1.0
198	73	26			1.0
200	73		26		1.0
203		26		73	1.0
247	97		2		0.979771
477		46	38		1.0
1945	90	10			0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain