SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15584

Length: 1541 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15584

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF659 multi-domain protein	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	75%
Blast2go	hypothetical protein VITISV_031313 [Vitis vinifera]	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, BED-type predicted	IPR003656	-	58%
Blast2go	Domain of unknown function DUF659	IPR007021	-	58%
Blast2go	Ribonuclease H-like domain	IPR012337	-	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB70

Fln msg: W1: There is no M at the beginning,

Fln protein: NNKWPSFTLSDASTDFKNMVPCGQKTRKFMMVRFL*SVHPSDMMVHPVLAHESLNSCKYTLMDSISFCKRNPLSSCIVGPLKPFPAACMASNIGS*

Protein Length: 97

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTTTATTTGCTCCTTTGCTTGATCCATAGCCTCATAAATGAAGCCCATAACCAACCTTTCCCCATCCACCAACCGCAACACCTTAACCAGTGGCTCAGCAAGCTTCACAATCTCTGCTGCCTTTCTCCAAAATATTTCTTCATTAACTTTCTTTTTCAATTCTTTGCCTTCCGGTTTGTGAGACCAATGGCTTTGATTCCATTCATCACTGGAAAACATCTTTTGCAAGTTTCTATGTTGGGAAAGCATAGATTGCAATGTCAAAAAATGAGTAGCAAATCTAGTGATGGCAGGCCTAATAATATCCTTGCCCCAGTGTGTTTCCTCATGAGACTCAAAACCAATGTATGATTGTAGATAAATTTTGTTATGCTTTTGGCATGATCTACAGTGTTTTTGACCCAATCTAATTTTCCAATATCCTCAAGCATGAGGTCTATGCAATGTGCAGCACATGGGGTCCAAAAGATGGTCTTGTGTTTTTCCTCTAACAGTTTACCAGCAAGAACATAGTTAGAGGCATTATCTGTGATGATTTGAACAACATTAGCCACCCCCACCTCCTCAACAACCTGATCCAATAGCTGAAACAACAAGTGGCCATCTTTTACCTTATCAGATGCATCAACTGATTTTAAAAACATGGTTCCCTGTGGGCAGAAGACAAGAAAGTTTATGATGGTACGGTTTCTTTGATCAGTCCATCCATCTGACATGATGGTACACCCTGTTCTTGCCCATGAGTCCCTGAACTCTTGCAAATACACATTAATGGATTCAATTTCTTTCTGCAAACGAAACCCCCTTAGCTCTTGCATAGTAGGGCCTTTGAAGCCTTTTCCAGCAGCATGTATGGCATCAAACATAGGCTCATAA___TATGGTGAACGAGCAGCATTAAAGGGGATATCAGCATCATACCACCATCTAGCTATGTAGTCACAAGCAGTCTCCCTCAATTCTTTCTTCCAATGGTCATCTAAAGTGGGCTGAATTTGACCTTTACTAACTTCAGGACCATGTGCATCTGATGGAGAGGAGGGAGAGTAATAACTTCTGATAGACACATCACCCTTTTTCGAATTCATTTTACCCTTTCCCTTATCTTGAACAGAAGCAAAAGAGGGAGGAACATAACGGAAAGGGTTGGGTGCCTCAGTTTGAGGGATAGAGGAAGAACCCTCAAAATCATAGTGGGGGTTGGTAGCCATCATTTTTTGTATCTCCCTCTTCCTGCTGATTTCATCCTGTATCTCTTTTTGCCTAGCCTTATCTTCTTGAAATTTCTCAAAGCTGGCCAACAAATTCTTTCTAATCTCCCCAATTTGATCAGAGCCACATGGGGTAATTTGGCCTCTAATCCCTGCCAAGTGTTGTTTCAACCTATGAATGCCCCCAGGACCATCCTTAATTTTCCTATGGCAAAATTTGCAATGCATATGACTATCAACCATTTCAACATATGCCCAAGCAGGATCCTTTGCTCTAGGTGCCGTTTTTTTACTAGGAAAACAATCTG

Fln Alignment:

sp_v1.1_unigene15584___SFTLSDASTDFKNMVPCGQKTRKFMMVRFL*SVHPSDMMVHPVLAHESLNSCKYTLMDSISFCKRNPLSSCIVGPLKPFPAACMASNIG
D5AB70_______________SLTLSDASTDLKNMVPCGQETRKFMIVRFFPSLHPSDMMVHPVLAHDTLKSIKYSSMDSTSFCKRDPLKSCILGPLKPLPQAIMESHIG

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
510		50		50	1.0
513		75		25	0.996473
523		75		25	0.996473
558			25	75	0.996473
737		50	50		1.0
738			50	50	1.0
740	50		25		0.995533
771		75	25		0.996473
807	75		25		0.996473
816	75	25			0.996473
823		66		33	0.997452
1239	33			66	0.997452
1261		33	66		0.997452
1262		66		33	0.997452
1264	33		66		0.997452
1305			66	33	0.997452
1312		66		33	0.997452
1315	66			33	0.997452
1320		33		66	0.997452
1345		66		33	0.997452
1358			75	25	0.996473
1386		25		75	0.996473
1393		50	50		1.0
1413			66	33	1.0
1423	37			62	1.0
1424	12		37	50	1.0
1429	62			37	1.0
1446		14	85		0.993533
1448		57		42	1.0
1459	85			14	0.993533
1465	57			42	1.0
1469		85		14	0.993533
1471	85			14	0.993533
1476		16		83	0.994512
1503		75		25	0.996473
1509	25		75		0.996473
1521			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain