SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15578

Length: 1032 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15578

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L38, putative n=1 Tax=Ricinus communis RepID=B9RM38_RICCO	-	-	7.0e-28	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	60s ribosomal protein l38	-	-	4.0252e-31	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	4.0252e-31	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	ribosome biogenesis	GO:0042254	Biological Process	4.0252e-31	93%
Blast2go	translation	GO:0006412	Biological Process	4.0252e-31	93%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	4.0252e-31	93%
Blast2go	cytosolic large ribosomal subunit	GO:0022625	Cellular Component	4.0252e-31	93%

Full-Lengther Next Prediction

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
85	50		33	16	1.0
88	33		50	16	1.0
89		33	16	16	1.0
90			50	50	1.0
91		33	66		1.0
92	33	16	50		1.0
106		66	33		1.0
119	25	75			1.0
120	18			81	0.999994
121			18	81	0.999994
123	17	5	76		1.0
124			17	76	1.0
126		5	41	52	1.0
128		76	23		1.0
155	93			6	0.999153
157			2	91	0.995208
158	5	2	2	88	0.985613
190	94		5		0.998744
539		10		90	0.90298
540			10	90	0.90298
541		10		90	0.90298
542	10			90	0.90298
544	90			10	0.90298
547		90	10		0.90298
550		10	90		0.90298
552			10	90	0.90298
553	50		50		1.0
554		10		90	0.90298
555	90	10			0.90298
566	87		12		0.992554
573	12	87			0.992554
578		87		12	0.992554
579	12			87	0.992554
580			75	25	1.0
582			12	87	0.992554
583	14		85		0.993533
584	14			85	0.993533
586	14	85			0.993533
587	14	85			0.993533
589		14	85		0.993533
592		14		85	0.993533
593	14		85		0.993533
594	28			28	1.0
596	57	14	28		1.0
597			40	60	1.0
598			20	80	0.995493
599			20	80	0.995493
600	40			60	1.0
601	60			20	0.99255
602		20		80	0.995493
603	25			75	0.996473
607			25	75	0.996473
608	75			25	0.996473
609		75		25	0.996473
610	75		25		0.996473
612	33			66	0.997452
613			33	66	0.997452
616	66			33	0.997452
618	66		33		0.997452
619	33	66			0.997452
622	66			33	0.997452
623	66		33		0.997452
625			33	66	0.997452
627		66		33	0.997452
851	45		54		1.0
853		20		80	0.995493
981	33		66		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain