SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15556

Length: 816 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15556

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chloroplast photosystem II light-inducible protein n=1 Tax=Pachysandra terminalis RepID=A1XX43_9MAGN	-	-	2.0e-39	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	photosystem ii 10 kda chloroplast	-	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis	GO:0015979	Biological Process	78%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	78%
Blast2go	oxygen evolving complex	GO:0009654	Cellular Component	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Photosystem II PsbR	IPR006814	-	0.0	78%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
95		91	1	7	1.0
96		91	8		1.0
301	10		90		0.90298
675		7		92	1.0
681	93			4	0.970804
754		28		63	1.0
758		2		91	0.999992
778		6		93	0.999453
786		30		60	1.0
789	14	14		71	0.984337
790	16		83		0.994512
791	14		85		0.993533
793	40	60			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
127	142	AGGCA AGGCA AGGCA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain