SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15554

Length: 1656 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15554

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SPFH domain-containing protein 2 precursor, putative	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	band 7 family protein	-	-	88%

Source	GOs	Term	Type	Identity
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	88%
Blast2go	plastid	GO:0009536	Cellular Component	88%
Blast2go	plasma membrane	GO:0005886	Cellular Component	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV3

Fln msg:

Fln protein: MDRGTVPGAPAPQEINLVQLLLVLIAVLVAICIPAVSSCFGILHQVPEGHVGAYWIGGALSKRITEPGFHLKMPVLTQYEPIQVTIQTDEVKNIPCGTKGGVMIYFDKIEVVNRLRKDYVYDTILNYGVTYDKTWIYDKIHHEINQFCSAHTLQDVYIDKFDQIDENMKEALQKDCTIYAPGIEIINVRVTKPTIPAIIARNYEQMEEERTKVLIAMERQKVVEKEAETEMKMAVTSAEKDALVSKIRMEQIIMEKESIKMQQIIENEMYLNREKSLADSSFYRVKKEAEANKLMLTPEYLELKFIEAIANNTKMFFGNKVPNMVFDQKLLGNFLREM*

Protein Length: 340

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTACACTACATCCCTAATACTTAGAGCTGTACGCCCAGTGAGCACTGAGTTGGATTAAAGCCCAGGCAAGCGGTATACCAAAGCTTTGCATTCAGCATTTCTCTGATCCTTTTTGTCATTATATATGAATTAGCGCGGTTTGGATTTGGTTTTCTAACCCGGTAGGACGAGTTCGAATTCTGGTG_-_ATGGATAGAGGGACCGTGCCTGGTGCGCCTGCACCCCAAGAGATCAATCTCGTGCAGCTTTTGTTGGTTCTTATTGCCGTACTGGTCGCGATATGTATTCCTGCTGTCAGTTCTTGTTTTGGTATTCTGCACCAAGTTCCAGAAGGACATGTTGGTGCTTACTGGATAGGCGGTGCTCTATCGAAGAGAATTACTGAACCTGGTTTCCATTTGAAGATGCCTGTTTTGACTCAGTATGAGCCAATTCAAGTGACCATCCAGACAGATGAGGTAAAAAATATACCATGTGGCACCAAGGGTGGTGTAATGATTTATTTTGATAAGATTGAGGTTGTTAATCGCCTTCGAAAGGATTATGTCTATGATACCATATTGAATTATGGTGTCACTTATGACAAGACTTGGATTTATGATAAAATTCATCATGAAATCAACCAGTTTTGCAGCGCGCACACTTTGCAGGATGTGTACATTGACAAGTTTGATCAGATTGACGAGAACATGAAAGAGGCTCTTCAAAAGGATTGTACCATTTATGCTCCTGGTATTGAAATCATTAATGTGAGAGTGACAAAACCCACAATTCCAGCAATCATTGCTCGAAATTATGAACAAATGGAAGAAGAGCGCACTAAGGTTCTGATAGCAATGGAGAGGCAAAAGGTAGTGGAAAAGGAAGCTGAAACAGAAATGAAAATGGCTGTGACATCAGCTGAGAAAGATGCACTCGTAAGTAAGATTCGCATGGAGCAAATAATTATGGAGAAAGAAAGCATAAAGATGCAACAAATAATAGAGAATGAAATGTACTTAAATCGGGAGAAAAGTCTTGCAGATTCTAGTTTTTACAGGGTTAAGAAGGAAGCTGAAGCAAACAAGCTAATGTTGACTCCAGAGTACCTAGAATTGAAGTTTATCGAGGCCATTGCAAATAATACAAAAATGTTTTTTGGAAACAAGGTACCCAACATGGTTTTTGACCAAAAACTTCTTGGAAACTTTTTGAGAGAAATGTAA___CAGCTGACAATCAAGGTTACAGGGTAAATAGCACTGTAGTCTAGTGCTCTTATTCTATTTCAGTTAAAGATCATACAATTTTTGTTTCAAGTAGAATCTTGCCAATGCGGAGATCTGTATGCATGCTGAATTCATAGTGAATCAAAGGGAGGGTCACGAGAAATCTTTTTTGTTGTTTCAATGCAAGGTGGAATTCTGCTTAGGCCAGAATCATTTATGCTTCCCTTATTAATAGTTTGAATTTCCAATGGGCACCAAGGTAAATTTGTATATGAAATCACATGCTTTCAAGAGACAAACATTTGTTCTGCATATTCACATCTTTTAACTATGGTCCAATATTGTTGGTTCTGTCAAGAATCTCATTTATATATCACAAGAAAAGAAGAGGTACTATTCCTGTGGATCATATTATATGGCTTACAAT

Fln Alignment:

sp_v1.1_unigene15554___MDRGTVPGAPAPQEINXXXXXXXXXXXXXXXXXXXXSSCFGILHQVPEGHVGAYWIGGALSKRITEPGFHLKMPVLTQYEPIQVTIQTDEVKNIPCGTKGGVMIYFDKIEVVNRLRKDYVYDTILNYGVTYDKTWIYDKIHHEINQFCSAHTLQDVYIDKFDQIDENMKEALQKDCTIYAPGIEIINVRVTKPTIPAIIARNYEQMEEERTKVLIAMERQKVVEKEAETEMKMAVTSAEKDALVSKIRMEQIIMEKESIKMQQIIENEMYLNREKSLADSSFYRVKKEAEANKLMLTPEYLELKFIEAIANNTKMFFGNKVPNMVFDQKLLGNFL
D5ACV3_______________MDRGPVPGVPASQEINLVQLLFVLIAVLVAISIPAVSSCFGILHQVPEGHVGAYWTGGALSKRITDPGFHLKMPVLTQYEPIQVTIQTDEVKNIPCGTKGGVMIYFDKIEVVNRLRKDYVYDTILNYGVTYDKTWIYDKIHHEINQFCSAHTLQDVYIDKFDQIDENMKEALQKDCTIYAPGIEIINVRVTKPTIPAVIARNYEQMEEERTKVLIAMERQKVVEKEAETQMKMAVTEAEKDALVSKIRMEQIIMEKESTKMQQIIENEMYLNREKSLADSNFYRVEKEAEANNLVLTPEYLELKFIEAIANNTKMFFGDKVPNMVFDQKLLGNFL

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
670		88	11		0.999952
672			11	88	0.999952
679	88	11			0.999952
680		11		88	0.999952
1040	88		11		0.923564
1041	88		11		0.923564
1045	11			88	0.923564
1046		11		88	0.923564
1047			88	11	0.923564
1223	87	12			0.992554
1273		80		20	0.999996
1302	90		10		0.90298
1403			21	68	1.0
1544	89	10			0.999919
1566	10		90		0.90298
1567	10		90		0.90298
1568			10	90	0.90298
1569		90	10		0.90298
1570		90		10	0.90298
1608	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain