SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15553

Length: 1235 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15553

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA thiolase 2, peroxisomal n=3 Tax=Brassicaceae RepID=THIK2_ARATH	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	3-ketoacyl- thiolase	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetyl-CoA C-acyltransferase.	EC:2.3.1.16	-	0.0	92%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	92%
Blast2go	Fatty acid metabolism	00071	92%
Blast2go	Valine, leucine and isoleucine degradation	00280	92%
Blast2go	Geraniol degradation	00281	92%
Blast2go	Benzoate degradation	00362	92%
Blast2go	alpha-Linolenic acid metabolism	00592	92%
Blast2go	Ethylbenzene degradation	00642	92%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	92%
Blast2go	Biosynthesis of plant hormones	01070	92%
Blast2go	Metabolic pathways	01100	92%
Blast2go	Biosynthesis of secondary metabolites	01110	92%

Source	GOs	Term	Type	Identity
Blast2go	glyoxysome organization	GO:0010111	Biological Process	92%
Blast2go	response to wounding	GO:0009611	Biological Process	92%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	92%
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	92%
Blast2go	acetyl-CoA C-acyltransferase activity	GO:0003988	Molecular Function	92%
Blast2go	peroxisome	GO:0005777	Cellular Component	92%
Blast2go	mitochondrion	GO:0005739	Cellular Component	92%
Blast2go	nucleolus	GO:0005730	Cellular Component	92%
Blast2go	chloroplast	GO:0009507	Cellular Component	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQ57

Fln msg: your sequence is shorter than subject: 221 - 462

Fln protein: TKIVDPKTGDEKPVTVSVDDGIRPTASLSDLAKLKPAFKKSGSTTAGNSSQVSDGAGAVLLMKRKVAIQKGLPILGVFRSFTAVGVDPAVMGVGPAVAIPAAVKAAGLEIDDIDLFEINEAFASQFTYCRQKLELDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGSAVDQLCNARPIKDHTSLSRDAR*

Protein Length: 222

Fln nts: AAACCAAGATTGTTGATCCTAAAACTGGGGATGAGAAGCCCGTCACGGTTTCTGTTGATGATGGCATTCGTCCTACTGCTTCTCTTTCTGATTTAGCGAAACTGAAACCTGCATTTAAGAAGAGTGGAAGCACTACTGCTGGAAATTCAAGCCAAGTAAGTGATGGAGCTGGTGCTGTATTGCTGATGAAGAGGAAAGTGGCTATACAGAAGGGTTTGCCTATTTTGGGTGTATTCAGGAGTTTTACTGCTGTTGGGGTTGACCCAGCTGTTATGGGAGTTGGCCCGGCCGTTGCAATCCCAGCAGCGGTGAAGGCAGCTGGGCTAGAAATTGATGATATTGATCTATTTGAGATAAATGAGGCATTTGCCTCGCAATTTACATACTGTAGACAGAAATTGGAACTAGACCCTGAAAAAGTAAATGTGAATGGAGGAGCTATTGCCCTTGGTCATCCCCTTGGAGCAACAGGGGCTCGTTGTGTGGCAACCTTACTGCATGAAATGAAACGCCGTGGAAAAGACTGCAGGTTTGGAGTTATATCGATGTGTATAGGCACTGGGATGGGGGCAGCAGCAGTATTTGAACGTGGCAGTGCTGTAGATCAGCTGTGCAATGCTCGGCCAATCAAGGATCATACCTCGCTGTCAAGAGATGCACGATAA___CAAACAGTGTTTTCTTGGAGTCTTGAAGGCTTTTCAATTATCTCCTTTTTAATGGACTCACTTCATGGGTTCTGGTTAACCTTTTAATGAGATGGCCTTTCTGGCCTATGGCCTGTATTGAGATTTTATGGCTTATGACATTTTCCATAGCATGGTTTTGGAATGGAATATAATAATGGCCATTTTTTAAATATTTAAAGTAAAATCTTGTCTGAAATATTGTGAACGAGACAAAAATGATGCATATGATTTGAAATGCTACTTTATGGACCTTTCGTAGCCATATGAAATATAAACTGGCACATGCATCTTAAATCGAGAACTATTCAGCACTGAGGAATAAAATGAGATTGAGCTGTGAACCTCTTGGCACTTAATAGATTGGAAGTTAAGGTGAATCCATGCTCGTGTGTAATTGGTTCTCTTTTATGTGGGTAGGAGCATTGCATGAAGACACACATGGAGTAAATGTATATCTGCTCCACCTGAACTGTAGAGCACAGTGTTTCTCTTGACTTGATCGCTAGTGTAATGAGAATGGAAGGAATGAATGAGAATTTTGATGTTAAG

Fln Alignment:

sp_v1.1_unigene15553___TKIVDPKTGDEKPVTVSVDDGIRPTASLSDLAKLKPAFKKSGSTTAGNSSQVSDGAGAVLLMKRKVAIQKGLPILGVFRSFTXXXXXXXXXXXXXXXXXXXXXXXXXLEIDDIDLFEINEAFASQFTYCRQKLELDPEKVNVNGGAIALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGSAVDQLCNARPIKDHTSLSRDAR
C0PQ57_______________TKIVDPKTGDEKPVRISVDDGIRPTASLSDLAKLKPAFKKGGSTTAGNSSQVSDGAGAVLLMKRTVAMQKGLPILGVFRSFTAVGVDPAVMGVGPAVAIPAAVKAAGLEIDDIDLFEINEAFASQFTYCSQKLELDPEKVNVNGGALALGHPLGATGARCVATLLHEMKRRGKDCRFGVISMCIGTGMGAAAVFERGSAVDQLCNARPIKDHTSLSKDAQ

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
737		89		10	0.999919
849		15		84	0.999986
850			15	84	0.999986
852		15		84	0.999986
853			15	84	0.999986
854	84			15	0.999986
855	84		15		0.999986
857		15		84	0.999986
858	84	15			0.999986
861			12	87	0.999964
862	81		18		1.0
863	86	13			0.999973
864	88			11	0.999937
868	88	11			0.999937
869	88			11	0.999937
870	88	11			0.999937
871	11			88	0.999937
1147		57	42		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain