SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15550

Length: 2149 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15550
GGATGTTGCTGCCACGCGAATGCTAAAAGGTAAAGGTTAAAGCCGAGGGGACGAAAGCTTTTAGTTTTGGTGTAAGGCTTATGGCGAGATCGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTTAGAGAATTCACATCCCGGCATTCTGCGTTTGTTCAAGGCTTTTCTTTGCGGATCTACGTTTGTAAAATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGCTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCAGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTGATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGATTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAGAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCCAGGATATTTAATGCTACTCCTTATTAGTTTTATATTTTTGGAATTAAAAAATCTTGGTCTTTGATTCCTTCCACTTGTTTACTCGTGATCAAATTCTATTACCAATTGAAAATTCTATTACCTACATTTTTCATTTTTCTGGTAAGGACAAATCATTTTGGTCCACTGCACTGCAATGTATCGTCATGGGAAACGGTCCTGAGATTGCGACCTTGATTTATGAGAAGAATGAAATGAACCCATGTTAAGCGTGGCCAATCAGAAATTACAAAATTACATGTGATCAAACGGAACGAGAACTTAACAATCTTTAGGACTGGACGAGGATTTTGGATAGTATTTTCTGCATCCGTCTATAGTGGAAAATTATTAAGATGCTT

Ace file of the UniGene sp_v1.1_unigene15550

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome subunit, putative; K03039 26S proteasome regulatory subunit N9	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	26s proteasome non-atpase regulatory subunit 13	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	proteasome regulatory particle, lid subcomplex	GO:0008541	Cellular Component	92%
Blast2go	nucleus	GO:0005634	Cellular Component	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Proteasome component (PCI) domain	IPR000717	-	0.0	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADZ2

Fln msg: your sequence is longer than subject: 387 - 100

Fln protein: MAALKYLETQRAAQPELAEWYNALADLYERKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYTEREAAISYLEGVIEKLRATRDTRIEEPILYVRMQIAALKLEQSEQKECKKLLDEGKHTLDSMTDIDPSVYASYHWVSSQYHKSRQEFAEFYKSALLFLAYTTVESLSEPFKLDLAFDLSLAALLGDNIYNFGELLAHPIVKSLLGTSVEWLYYILQAFNAGDLARYQELCHVHRDALNAQPALVENEKKLLEKINILCLMEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLVAS*

Protein Length: 388

Fln nts: GGATGTTGCTGCCACGCGAATGCTAAAAGGTAAAGGTTAAAGCCGAGGGGACGAAAGCTTTTAGTTTTGGTGTAAGGCTTATGGCGAGATCGAAGGCAGGTACTAACAGTTAGTTAATTTTCAGAGGAACGGGCCGCGAAGGGGTTAGAGAATTCACATCCCGGCATTCTGCGTTTGTTCAAGGCTTTTCTTTGCGGATCTACGTTTGTAAA_-_ATGGCCGCTCTCAAGTATCTGGAAACGCAGAGGGCAGCCCAGCCCGAACTGGCCGAATGGTACAATGCATTGGCTGATCTCTACGAGCGCAAGCTGTGGCACCAACTCACTCTCAAGCTCGAACAGTTCGTAGCCCTCGCAGTTTTTCAGGCTGGTGATGCGCTTATCCAACTATATCACAATTTTATAACAGATTTTGAGACGAAGATCAATCTGCTTAAGCTTGCACATTTTGCTGTTATTGTTTCTCGTCAGTACACAGAAAGGGAAGCTGCTATCAGCTACTTAGAGGGAGTAATCGAGAAGCTTCGTGCCACAAGGGATACACGAATTGAGGAACCAATACTATATGTTAGAATGCAAATAGCTGCATTAAAACTTGAACAAAGTGAACAGAAAGAATGTAAAAAGCTACTAGATGAGGGCAAACATACACTGGACAGTATGACTGATATAGATCCTTCTGTTTATGCAAGCTACCATTGGGTCTCATCTCAGTATCATAAGTCGAGACAAGAATTTGCTGAGTTTTATAAAAGTGCTCTTCTGTTTCTGGCTTATACTACTGTAGAGTCTCTTTCAGAACCGTTCAAGCTGGATTTAGCATTTGACTTGTCTCTTGCTGCATTACTTGGAGATAACATATACAACTTTGGAGAACTGTTGGCACATCCAATTGTGAAGAGTCTTCTGGGTACGAGTGTAGAGTGGCTATATTATATTTTACAAGCATTTAATGCTGGTGACTTAGCTCGGTATCAAGAACTATGTCATGTTCATAGGGATGCTCTCAATGCACAACCGGCGCTTGTAGAGAATGAGAAAAAGTTGCTGGAAAAGATTAATATCCTATGCTTGATGGAGATCATATTTAGCCGTCCTTCAGAAGATAGAACAGTCCCACTGAGTATCATTGCAGACCGAACCAAATTATCAATTGAAGATGTTGAGTATCTCCTCATGAAAAGCCTTTCTGTTCATTTAATTGAAGGGGTTATTGACCAAGTTGATGCGACTGTGCATGTATCTTGGGTACAGCCTAGAGTGCTGGGAATACCCCAGATCAAATCCTTAAGGGATAAGCTTGACAATTGGCTGCAAAAAGTCCACACAACTCTGTTGGCTGTTGAAGCTGAAACCCCAGATTTAGTGGCATCATGA___TTGAAAAGTAAAGCGTAGACGAAGGCATCAAATGAAAGCATGGCCATTTTAAGTTGTTGACAATTGTCAATGAGTCTTCCATGGAGATGCGATAATTTAACCCCATCTTTTCAGCCGTCTGCATTATTGTTGTTAGCTTTTCAAAGATAGTAATTTGTGCCTTTCTTTGAGGTCAGAGAATTCATGCAGCAATTTGTCCTAACAGAGCATTTGTTTTCAGCACTGTCAAAGAAAGACTCAGTTTGCTGATTTTTGTAGGGATCGAATCTGTAACTTTGCTGGCCATGAATATTTCACTGAGATCAGTATAGTCCATCTTTTGTGTGTTTGAATTTCAATTTGATAAGAGATGTAATATTTGGGAACGAATATTATTCTGTAGCTGCTAATAATTCCAGGATATTTAATGCTACTCCTTATTAGTTTTATATTTTTGGAATTAAAAAATCTTGGTCTTTGATTCCTTCCACTTGTTTACTCGTGATCAAATTCTATTACCAATTGAAAATTCTATTACCTACATTTTTCATTTTTCTGGTAAGGACAAATCATTTTGGTCCACTGCACTGCAATGTATCGTCATGGGAAACGGTCCTGAGATTGCGACCTTGATTTATGAGAAGAATGAAATGAACCCATGTTAAGCGTGGCCAATCAGAAATTACAAAATTACATGTGATCAAACGGAACGAGAACTTAACAATCTTTAGGACTGGACGAGGATTTTGGATAGTATTTTCTGCATCCGTCTATAGTGGAAAATTATTAAGATGCTT

Fln Alignment:

sp_v1.1_unigene15550___MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDATVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV
D5ADZ2_______________MEIIFSRPSEDRTVPLSIIADRTKLSIEDVEYLLMKSLSVHLIEGVIDQVDGTVHVSWVQPRVLGIPQIKSLRDKLDNWLQKVHTTLLAVEAETPDLV

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1394		92		8	0.999718
1397	92		8		0.999718
1487	94		5		0.9982
1490		95		5	0.997749
1500	95		5		0.997749
1501			5	94	0.997984
1628			42	55	1.0
1837	20	60		20	0.99255
1839			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain