SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15549

Length: 1141 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15549

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Caleosin n=1 Tax=Cycas revoluta RepID=B8XX15_CYCRE	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	embryo-specific protein 1	-	-	76%

Source	ECs	Term	Type	e value	Identity
Blast2go	Heme oxygenase.	EC:1.14.99.3	-	0.0	76%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Porphyrin and chlorophyll metabolism	00860		0.0	76%
Blast2go	Glycerol-3-phosphate O-acyltransferase.	EC:2.3.1.15	-	0.0	76%

Source	KEGGs	Term	Type	Identity
Blast2go	Glycerolipid metabolism	00561		76%
Blast2go	Glycerophospholipid metabolism	00564		76%
Blast2go	Metabolic pathways	01100		76%
Blast2go	Lipoxygenase.	EC:1.13.11.12	-	76%

Source	KEGGs	Term	Identity
Blast2go	Linoleic acid metabolism	00591	76%
Blast2go	alpha-Linolenic acid metabolism	00592	76%
Blast2go	Biosynthesis of plant hormones	01070	76%
Blast2go	Metabolic pathways	01100	76%

Source	GOs	Term	Type	Identity
Blast2go	defense response	GO:0006952	Biological Process	76%
Blast2go	phosphatidylglycerol biosynthetic process	GO:0006655	Biological Process	76%
Blast2go	response to fungus	GO:0009620	Biological Process	76%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	76%
Blast2go	response to salt stress	GO:0009651	Biological Process	76%
Blast2go	response to desiccation	GO:0009269	Biological Process	76%
Blast2go	response to cold	GO:0009409	Biological Process	76%
Blast2go	response to salicylic acid stimulus	GO:0009751	Biological Process	76%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	76%
Blast2go	lipid particle organization	GO:0034389	Biological Process	76%
Blast2go	oxylipin biosynthetic process	GO:0031408	Biological Process	76%
Blast2go	calcium ion binding	GO:0005509	Molecular Function	76%
Blast2go	heme oxygenase (decyclizing) activity	GO:0004392	Molecular Function	76%
Blast2go	linoleic acid epoxygenase activity	GO:0071614	Molecular Function	76%
Blast2go	glycerol-3-phosphate O-acyltransferase activity	GO:0004366	Molecular Function	76%
Blast2go	lipoxygenase activity	GO:0016165	Molecular Function	76%
Blast2go	integral to membrane	GO:0016021	Cellular Component	76%
Blast2go	microsome	GO:0005792	Cellular Component	76%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	76%
Blast2go	chloroplast membrane	GO:0031969	Cellular Component	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZJ2

Fln msg:

Fln protein: MASNESLQTTAAMAPVTVERRVNPNLDDELPKPFLPRALVAVDTEHPSGTPGHQHGDMSVLQQHVAFFDRNNDGIVYPWETFLGLRAVGFNIIISFFGCLIINISLSYPTLPGWIPSPFFPIYIDRIHRAKHGSDSEVYDTEGRFVPSKFEEIFTKNARTHPDKLSFSELWNLTEHNRNALDLLGWIAAKLEWFLLYLLAKDPHGFVPKEAARGVFDGSLFEFCEKSRRSNKQQ*

Protein Length: 236

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTGCTTTTGGTTAACATGTGTGCTGCAAAAAAAAATTGAACTCCATCAAATCTAGTTCCAGGAATTGCAGGTCGCGAGGTCGGATCTGTGGGACTGAGCAAATTATTATCACTGTGATCGAGAAAGTATTTAAGTACCAGCTATA_-_ATGGCTTCCAATGAGTCTTTACAGACAACAGCTGCTATGGCACCAGTAACTGTCGAGCGCAGGGTTAATCCCAATCTCGATGACGAACTCCCAAAACCATTTCTCCCAAGGGCGCTCGTAGCAGTTGACACAGAACATCCGAGTGGAACTCCTGGACACCAACACGGCGACATGAGCGTTCTTCAACAGCACGTCGCATTTTTTGATCGCAACAACGACGGGATTGTGTACCCTTGGGAGACTTTCTTAGGTCTTCGTGCCGTGGGTTTTAACATCATAATCTCGTTCTTTGGTTGCCTTATTATCAACATTTCCTTGAGCTACCCTACGTTGCCTGGATGGATTCCCTCGCCATTTTTCCCAATCTATATTGATAGGATTCATCGAGCGAAGCATGGAAGCGATTCCGAAGTTTATGACACAGAAGGAAGGTTTGTCCCCTCTAAATTCGAAGAAATTTTTACAAAAAATGCCAGAACCCATCCAGATAAACTGTCATTCTCTGAGCTGTGGAATTTGACGGAACACAATAGAAATGCGCTTGATCTTCTAGGATGGATTGCGGCGAAGTTAGAATGGTTCTTGTTATACCTTCTGGCTAAAGACCCCCATGGTTTTGTGCCCAAGGAAGCTGCGAGAGGTGTATTTGATGGTAGCTTGTTCGAGTTCTGCGAGAAGTCTCGAAGGTCAAACAAGCAACAGTGA___AATCCCTGGCCTTTAAGATTTGAAGCTCTAAAAAGCTCTTGCGGTCATTGTCATAAATTGGTGCTCCTCGGTGGACTACTCTACAAAGATGGGGTGGCAATGTATATATAGGAAGAAAATGCATTGAATTAGGAACCAACTGGTTGAGCCTTCTTTTAAGATTGAAGATTGTAGTCATAAAACCTTCCTCCCCTATAAATAAGACAATATTAGGCACGCATTCGAATACATGTCTGTTTTTAAATGAATCTGCACCTCAACACAAT

Fln Alignment:

sp_v1.1_unigene15549___SNESLQTTAAMAPVTVERRVNPNLDDELPKPFLPRALVAVDTEHPSGTPGHQHGDMSVLQQHVAFFDRNNDGIVYPWETFLGLRAVGFNIIISFFGCLIINISLSYPTLPGWIPSPFFPIYIDRIHRAKHGSDSEVYDTEGRFVPSKFEEIFTKNARTHPDKLSFSELWNLTEHNRNALDLLGWIAAKLEWFLLYLLAKDPHGFVPKEAARGVFDGSLFEFCEKSRRSNKQQ
A9NZJ2_______________SAESMQTVAAKAPVTSRRKLNTELNEQMPKPYLARALVAVDPNCLNGSKGHHHNNMSVLQQHVAFFDRNKDGIIYPWETYQGFRAIGFNIPISLVAGLFINLTLSYPTSSSWIPSLLLPIHIDNIHKGKHGSDSEVYDTEGRFVPAKFDAIFSKYACTFPDKLTYSELQAMLKANRNVNDLFGWVAARAEWSFLYNLAKNKEGFLEKEAMRALYDGSLFEYFEKQYASRKTQ

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
652		88		11	0.923564
653	88			11	0.923564
654			11	88	0.923564
655		88	11		0.923564
657	88			11	0.923564
659	88			11	0.923564
660		11		88	0.923564
662	88	11			0.923564
663	88			11	0.923564
782	83			16	0.994512
784		16	83		0.994512
786		16		83	0.994512
787	16			83	0.994512
788			16	83	0.994512
791	16			83	0.994512
793		83		16	0.994512
794		83	16		0.994512
795	16	83			0.994512
796	87	12			0.992554
800	88	11			0.923564
1028		66		33	1.0
1118	71	28			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain