SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15548

Length: 1550 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15548

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	phosphoglycerate mutase-like protein [Glycine max]	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	phosphoglycerate mutase-like protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Histidine phosphatase superfamily, clade-1	IPR013078	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABX9

Fln msg: your sequence is longer than subject: 335 - 287

Fln protein: MSFLLFGSPPLLSPCISNLKVGDPARRISQRNSKRTSAICCSSITKDMAETPGSGLYPLHHCKTLHLVRHGQGYHNVAGEKDFGAYMSYEYVDACLTPLGWQQVDNLRKHIWKTGIAPRIELVVTSPLMRTMQTAVGVFGGEGYVDGDTCPPLMVAGAGNSNHAAITSANCPPFIAIEWCREHLGVHPCDKRKSISEYQPIFPGIDFSLVETNEDVLWKSDVREKDEEVAARGRTFLNWLLTRKEKEIAVVSHSGFLIHTLGLFGKDCHPLVRKEIHTPYANCELRSLVIADRSAIGTNLPMTDFPGGTPPGPDVPSDYEDVTNLEAEDKVASL*

Protein Length: 336

Fln nts: TACTATGGGGACAGATGCTTTTTCTCTTTTCTCGAGAGGAATGCGGGGACGAGATCCCCTGCAAGATACGTTTACTTGTGATTCCAATTATTAAACGTCGAGCTCTTCCATATAAAG_-_ATGTCGTTTCTTTTGTTTGGCAGTCCACCTCTTTTGTCTCCTTGTATTAGCAATCTGAAGGTTGGGGACCCTGCGAGGCGGATTTCACAGAGGAATTCAAAGAGGACGTCTGCCATCTGTTGCAGCTCCATTACTAAAGATATGGCTGAAACTCCAGGTTCAGGTTTATATCCTTTGCACCATTGTAAAACTTTGCACCTGGTAAGGCATGGGCAGGGCTACCATAATGTGGCAGGAGAGAAAGACTTTGGTGCATACATGTCATATGAATATGTCGATGCATGCCTCACTCCTTTAGGATGGCAGCAGGTTGACAATCTTCGTAAGCATATTTGGAAAACTGGCATTGCTCCTAGGATTGAATTGGTCGTGACTTCTCCTTTAATGAGGACTATGCAGACAGCAGTGGGTGTTTTTGGTGGTGAAGGCTATGTAGATGGTGATACATGTCCTCCACTAATGGTGGCTGGTGCTGGCAATAGCAATCATGCTGCAATCACAAGTGCAAATTGTCCACCTTTTATAGCCATTGAATGGTGTCGAGAACATTTGGGAGTGCATCCATGTGACAAGAGGAAAAGCATTAGTGAATATCAGCCCATTTTTCCTGGGATTGATTTTTCTCTGGTAGAAACAAATGAAGATGTTTTGTGGAAGTCAGATGTCAGAGAAAAAGATGAAGAAGTTGCAGCTCGTGGAAGAACTTTTCTTAATTGGTTGTTGACAAGAAAGGAAAAGGAAATAGCAGTCGTTTCGCACAGTGGCTTTCTAATACACACATTGGGGCTCTTTGGGAAGGACTGCCATCCCTTGGTTAGAAAAGAGATCCACACGCCGTATGCAAACTGTGAACTACGTTCTCTTGTTATTGCAGACAGAAGCGCAATTGGAACCAATTTGCCCATGACAGATTTTCCCGGAGGCACTCCACCTGGTCCTGATGTCCCTAGTGATTATGAAGATGTCACAAATTTAGAGGCTGAAGATAAAGTGGCTTCGTTATAA___ATCCAGTTGAAAACAGGATTTTTATAGAATACAAAATTCGTCTCATTGAAACTCAAGTTGTTACAGATGATTTCAGAAAACTGCTTATTTGGAAGGGTTTCCTGTCATTGTTGCCCGTCCAATAAAATTATATTCTCACTTCGTTGTATTGTAACTTTCCTTGATATCTGGAGAGAGATATTTTCCATACTGAAATTCAATGTCTGGAACGGCAGATTATATCCATTAATTCCATGATTATGGGATGACGTAGAAGCTGATTAAGATATACTGAATTTCTCGTGTTTACCATGTGAATGGGTCTAGTTTATGAGATAGGCCTGTTCAAATACTCCCAAGAACTTAGCAGATAGCAACTTGTGTATTAAAAATTGACTTAGTGTACTCAAATATTTGTTTTACATAATACATTGCCTCATTGGGTGATC

Fln Alignment:

sp_v1.1_unigene15548___MAETPGSGLYPLHHCKTLHLVRHGQGYHNVAGEKDFGAYMSYEYVDACLTPLGWQQVDNLRKHIWKTGIAPRIELVVTSPLMRTMQTAVGVFGGEGYVDGDTCPPLMVAGAGNSNHAAITSANCPPFIAIEWCREHLGVHPCDKRKSISEYQPIFPGIDFSLVETNEDVLWKSDVREKDEEVAARGRTFLNWLLTRKEKEIAVVSHSGFLIHTLGLFGKDCHPLVRKEIHTPYANCELRSLVIADRSAIGTNLXXXXXXXXXXXXXXXXXXYEDVTNLEAEDKVASL
D5ABX9_______________MAKTPDSGLYPLHHCKILHMVRHGQGYHNVAGEKDFGAYMSYEYVDASLTPLGWQQVDNLRNHIWKTGFASRIELVVTSPLMRTMQTAVGVFGGGGYIDGDACPPLMVEGAGSSNHAAITSANCPPFIAIEWCREHLGVHPCDKRKSISEYQPLFPGIDFSLVEKNEDVLWKSDVREKEEEVAARGRTFLNWLLTRKEKEIAVVSHSGFLIHTLGLFGKDCHPLVRKEIHTEYANCELRSLVIADRSAIGTNLPTTDFPRGTPPGPDVPSDYDDVKNLEAEDKVASL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
986	11			88	0.923564
1054		84	15		0.999986
1055	84			15	0.999986
1057		84	15		0.999986
1060	15		84		0.999986
1061		15		84	0.999986
1063		84		15	0.999986
1066	84	15			0.999986
1071	15	84			0.999986
1316		90		10	0.999898
1426	76		23		1.0
1462	12	87			0.992554
1463	12			87	0.992554
1464	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain