SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15542

Length: 1098 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15542

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF803 domain containing protein	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	79%
Blast2go	non-imprinted in prader-willi angelman syndrome region	-	-	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	membrane	GO:0016020	Cellular Component	0.0	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Magnesium transporter NIPA	IPR008521	-	0.0	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6GY13

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 183 - 344

Fln protein: S*PWLSLIVPYYGPTHIMVYIGVCSLMGSLSVMSCKALGIALKLTFSGMNQLIYPQTWAFALVVITCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPSQIVTAMYGFVTILSGTFLLHKTKDLGDSSSSVISLSPSFSSRNSKHSSENGCISEEIPLRCQDSFP*

Protein Length: 184

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTCCATATTATGGTCCCACTCATATTATGGTATACATCGGTGTTTGTTCGCTTATGGGATCTCTCTCGGTCATGAGTTGTAAGGCACTAGGAATTGCTTTGAAACTTACATTTTCAGGAATGAATCAGCTTATCTACCCACAAACATGGGCTTTTGCCCTGGTTGTCATTACTTGTGTTATCACACAAATGAATTATTTAAATAAGGCTCTGGACACTTTTAACACGGCAGTTGTATCTCCAATCTATTACGTGATGTTCACATCGCTTACCATCCTTGCAAGTGTAATCATGTTCAAGGACTGGGACAGGCAAAATCCATCTCAAATTGTTaCTGctATgTacGGTTTTGTTACAATCCTTTCTGGCACATTTTTGCTGCATAAGACCAAAGATCTTGGGGACAGTTCATCTAGTGTAATAAGTCTGTCACCGTCTTTCTCTTCCCGCAACTCAAAGCATTCTTCAGAGAATGGATGTATCTCTGAGGAGATTCCACTTCGTTGCCAAGATTCTTTTCCCTAA___TGCTCCTTCTATTACACATAATCAATATGGAATCTTCATGTCATGCTTTTAAAAGAGTGACCATAATGTAATATTAGAATATTGTTTGTTCTCAAGCCCTCGTCTTTATTTCAACCAATTGTTCTTATTCTTTTCAGAGTGGGAGATTATTATAACTAGTTCAACAAGTGGAAGAATTATTGCATAGTTGAGTTGTAAATGAAACTATGCAGATATTTCTATACTTATTCCACAGTCATCCACCAAATAAGCTGAAAAGAGCCTGATAGCAATTTGTGGCAACATGTGATTTGCCTTCATACATTATAAAAGTCTGAAAATCTGCAAGTCTCTTCTTATTTTTAACTGGATGGCTGATATTCAGTCATATCCTTCTTATTATTGACTGGAACTGATGTCCAGGTGACTGCTTTTAATACATTTTCCATTTCCTTTCTCATGATGCTTTTGAGAAGTCAAAGGTCGGCGCCTTCGCAACGAACCAAAAGCCGTGGCAATTTTTATTTGAGAAGCTAATGAAATGCAGCAGTGCTCATTCTAATCTTAT

Fln Alignment:

sp_v1.1_unigene15542___VPYYGPTHIMVYIGVCSLMGSLSVMSCKALGIALKLTFSGMNQLIYPQTWAFALVVITCVITQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQNPSQIVTAMYGFVTILSGTFLLHKTKDLGDXXXXXXXXXXXXXXRNSKHSSENGC-ISEEIPLRCQDS
F6GY13_______________IPLYGQTHIMVYIGVCSLVGSLSVMSVKALGIALKLTFSGMNQLIYPQTWAFTIVVITCVITQMNYLNKALDTFNTAVVSPIYYAMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILSGTFLLHKTKDMVE------GSSPSFAVRLPKHTDEDGFELEEDIPFQCQDS

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
135	80			19	1.0
136	80	19			1.0
994			20	80	0.995493
996	80	20			0.995493
1003		33		66	0.997452
1031			33	66	0.997452
1032		33		66	0.997452
1033	33			66	0.997452
1034	66		33		0.997452
1035		66		33	0.997452
1036			33	66	0.997452
1037	33	66			0.997452
1038	66		33		0.997452
1039		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain