SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15541

Length: 1438 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type I, chloroplastic n=10 Tax=Pinaceae RepID=CB21_PINTH	-	-	89%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	97%
Blast2go	chlorophyll a b-binding protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	photosynthesis, light harvesting	GO:0009765	Biological Process	95%
Blast2go	protein-chromophore linkage	GO:0018298	Biological Process	95%
Blast2go	metal ion binding	GO:0046872	Molecular Function	95%
Blast2go	chlorophyll binding	GO:0016168	Molecular Function	95%
Blast2go	photosystem II	GO:0009523	Cellular Component	95%
Blast2go	integral to membrane	GO:0016021	Cellular Component	95%
Blast2go	photosystem I	GO:0009522	Cellular Component	95%
Blast2go	chloroplast thylakoid membrane	GO:0009535	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Blast2go	Chlorophyll A-B binding protein, plant	IPR001344	-	95%
Blast2go	Chlorophyll A-B binding protein	IPR022796	-	95%
Blast2go	Chlorophyll a/b binding protein domain	IPR023329	-	95%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q00984

Fln msg:

Fln protein: MATASAIQSSSFAGQALLRPQQNELVKKVGTSQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK*

Protein Length: 268

Fln nts: TACATGGGGACAATTGAAATCTCTCATCACTTGCTACCTGACCTCAGTTTCTTTCATTGTCTCGCTCACC_-_ATGGCAACAGCTTCAGCCATCCAGAGCTCAAGCTTCGCAGGCCAGGCCCTCCTGAGGCCGCAGCAGAATGAGCTTGTCAAGAAGGTGGGCACGTCGCAGGCTCGAATCACCATGCGTAGAACCGTCAGGAGCGCCCCTGAGAGCATATGGTATGGACCTGACCGCCCCAAGTACCTGGGCCCCTTCTCGGAACAGACGCCATCGTATCTCACCGGAGAATTTCCCGGCGACTACGGGTGGGACACAGCCGGGCTTTCTGCCGATCCCGAGACCTTCGCCAAAAACAGAGAGCTGGAGGTGATCCACTGCAGATGGGCCATGTTGGGGGCGCTCGGTTGCATTTTCCCGGAGCTGTTGGCCAAAACCGGTGTGAAATTTGGGGAAGCCGTGTGGTTCAAGGCCGGGGCGCAGATATTCTCAGAGGGAGGCCTCGACTACCTGGGGAACCCCAACCTGATCCACGCGCAGAGCATTCTGGCCATCTGGGCGTGCCAGGTTGTGCTCATGGGATTGATTGAGGGATACAGAGTTGGGGGAGGACCCCTTGGTGAGGGGTTGGACCCTCTGTACCCTGGGGGAGCCTTCGATCCACTGGGGCTGGCCGACGACCCGGAGGCGTTCGCGGAGCTGAAGGTGAAGGAGATTAAGAACGGGCGGCTGGCCATGTTCTCCATGTTCGGCTTCTTCGTGCAGGCAATTGTGACCGGGAAGGGCCCCATTGAAAATCTGTACGACCACTTGGCGGACCCCACTGCCAACAATGCCTGGGCCTACGCCACCAATTTCGTTCCCGGCAAGTAA___AGTAACGGAAAATAAAAGATGGCTGTAATCTCTGTATCATACATCCGACAGACTTTCCTGTTAATAAGCCAATGTTCCTTCAACGGTTTTTTCTAGTTCGCGCTTACTTTTTATCACTCCTTGTATTCTGAACCATGAGTGGCCTTTCGGTTTCTCCTAAAGCCTCAATGATCCATTTAGTTACTCTTATTTTAGAGGTAGGTGATGCAACGTCATGGTCTTTCTTTCATTTTCTTTGGATTTAGGTTATTGCATCTTTTTAAATTAACTAGAAAAAATGTTAAGTAAAAAGTCATTTTCTCTGTAAGTTAGACTACACTACACTAATCTAGAAATATAATTGAACAAGGTTCAAATGCCCATCACTGTCAAAGTAGGTGCATGGTGATAAGAAATGAAACCACGAGTGAAGTGGTGCGAAATGAAACGACGAATGAAGTGTTACAGGAAGGCAAACTTGCTCTCATATCCATCAATATGTTGATTATTTTTTATGAGTATGAAAGCAAGGCACGTGGGTATGTTTATTATTTTATTGAGTATTATAATTTGAAGAGTTGAAATATT

Fln Alignment:

sp_v1.1_unigene15541___MATASAIQSSSFAGQALLRPQQNELVKKVGTSQARITMRRTVRSAPESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCIFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVXXXXXXXXXXXXXXXXAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPTANNAWAYATNFVPGK
Q00984_______________MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSAPESIWYGPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPELLAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
207		85		14	0.993533
255		71		28	1.0
370			66	33	0.997452
931		57		42	1.0
953		14		85	0.993533
1191		20	80		0.995493
1284	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain