SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15536

Length: 954 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15536 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Antimicrobial peptide 1 n=1 Tax=Pinus monticola RepID=AMP1_PINMO	-	-	92%
FL-Next	tr=Antimicrobial peptide 3; Pinus sylvestris (Scots pine).	-	-	99%
Blast2go	af410953_1antimicrobial peptide 2	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	response to other organism	GO:0051707	Biological Process	80%
Blast2go	defense response	GO:0006952	Biological Process	80%
Blast2go	negative regulation of growth	GO:0045926	Biological Process	80%
Blast2go	extracellular region	GO:0005576	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Gamma-crystallin-related	IPR011024	-	80%
Blast2go	Antimicrobial protein MiAMP1	IPR015201	-	80%
Blast2go	Antimicrobial/protein inhibitor, gamma-crystallin-like	IPR015791	-	80%

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
834		84		15	1.0
850	15			84	1.0
858	97	2			0.99791
867	20	0	77		1.0
869	0	4	93	1	1.0
870		4	0	94	1.0
871	0	11	85	1	1.0
872	88	8	0	0	1.0
873	3	5	88	1	1.0
874		3	0	77	1.0
875	1	75	1	20	1.0
878	4	88		2	1.0
879	97			2	0.914425
880	2		1	73	1.0
881			8	92	0.999718
882	33			22	1.0
883	22		77		0.999999
884		14		85	0.993533
886		85	14		0.993533
887	14			85	0.993533
890		16	83		0.994512
892		16	83		0.994512
893	16			83	0.994512
905			87	12	0.992554
906		87	12		0.992554
909	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain