SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15532

Length: 1018 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15532

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sucrose synthase n=1 Tax=Pinus taeda RepID=A6N837_PINTA	-	-	94%
FL-Next	tr=Sucrose synthase; Pinus taeda (Loblolly pine).	-	-	94%
Blast2go	sucrose synthase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sucrose synthase.	EC:2.4.1.13	-	0.0	90%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	90%
Blast2go	Metabolic pathways	01100		0.0	90%

Source	GOs	Term	Type	Identity
Blast2go	biosynthetic process	GO:0009058	Biological Process	90%
Blast2go	sucrose metabolic process	GO:0005985	Biological Process	90%
Blast2go	sucrose synthase activity	GO:0016157	Molecular Function	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Sucrose synthase	IPR000368	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A6N837

Fln msg: Distance to subject end: 284 aas, your sequence is shorter than subject: 339 - 833

Fln protein: LVKTEEHLKKFPKDTPYAEFEYKLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSHQGYFGQANVLGMPDTGGQVVYILDQGRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTDKQHRLTALHG

Protein Length: 340

Fln nts: TTGGTAAAAACAGAAGAGCATCTCAAAAAGTTCCCCAAGGATACGCCATATGCAGAGTTTGAATACAAGTTACAAGAAATGGGATTGGAAAAAGGATGGGGAGAGAATGCAGAACATGTCTTGGATACGATTCATTTGCTCTTGGAGATCCTTCAGGCACCTGATCCATCAAATTTAGAAACGTTTCTAGGAAGGGTTCCTATGGTCTTTAATGTTGTGATTCTTTCACATCAGGGTTATTTTGGCCAAGCAAATGTTTTAGGAATGCCCGACACCGGTGGACAGGTTGTGTATATACTTGATCAAGGGCGCGCCTTGGAGAATGAAATGCTATTGAGAATAAAACAACAAGGATTGGACATTACGCCTGAGATTATTGTGGTGACTCGGCTGATCCCTGAGGCTCACGGGACAACATGCAATCAACGACTTGAAAAAATTAGTGGAACACAACATTCACGGATCCTACGGGTGCCCTTCAGAACAGAAAAAGGAGTTGTGCGCGACTGGGTTTCTCGATTTGATGTGTGGCCTTACTTGGAAAGATTTTCGGAGGATGTAACAAATGAAATAGCCGTGGAGCTGAAAGGTCAACCTGATCTGATTATTGGCAATTACAGTGATGGAAATTTAGTCGCATCTTTGATGGCACATAAACAAGGAATCACTCAGTGCAACATAGCCCATGCTTTGGAGAAGACCAAATACCCAGATTCAGACATATATTGGAAGAATTTTGAAGAAAAATACCATTTCTCTTGTCAGTTTACTGCAGATCTAATCGCAATGAACCATGCAGATTTCATTATCACTAGCACATATCAAGAGATTGCAGGGAGCAAGGATACTGTTGGACAGTACGAAAGCCACACTGCTTTCACCCTTCCTGGTCTCTACCGTGTGGTACATGGAATTGATGTTTTTGATCCCAAGTTCAACATTGTTTCTCCTGGAGCAGACATGCAGATTTATTTCCCTTATACAGACAAGCAGCATCGCCTTACTGCTTTACATGGTA

Fln Alignment:

sp_v1.1_unigene15532___LVKTEEHLKKFPKDTPYAEFEYKLQEMGLEKGWGENAEHVLDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSHQGYFGQANVLGMPD--TGGQVVYILDQGRALENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTDKQHRLTALHG
A6N837_______________LVKTEEHLKKFPKDTPYAEFEYKLQELGLEKGWGENAEHALDTIHLLLEILQAPDPSNLETFLGRVPMVFNVVILSPHGYFGQANVLGMPDHPVDRLCIYLINVA-PLENEMLLRIKQQGLDITPEIIVVTRLIPEAHGTTCNQRLEKISGTQHSRILRVPFRTEKGVVRDWVSRFDVWPYLERFSEDVTNEIAVELKGQPDLIIGNYSDGNLVASLMAHKQGITQCNIAHALEKTKYPDSDIYWKNFEEKYHFSCQFTADLIAMNHADFIITSTYQEIAGSKDTVGQYESHTAFTLPGLYRVVHGIDVFDPKFNIVSPGADMQIYFPYTEKQHRLTALHG

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
636		89	10		1.0
684		88		11	1.0
717	10		89		1.0
840		87	12		0.992554
841	87			12	0.992554
842	87	12			0.992554
843			87	12	0.992554
847	87		12		0.992554
848		87		12	0.992554
850			87	12	0.992554
852		12		87	0.992554
853		12	87		0.992554
854			87	12	0.992554
855	87	12			0.992554
857	85			14	0.993533
858	14		85		0.993533
861	14	85			0.993533
866			85	14	0.993533
868		85	14		0.993533
870	14	85			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain