SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15528

Length: 1488 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15528

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	34%
FL-Next	sp=E3 ubiquitin-protein ligase RING1; Gossypium hirsutum (Upland cotton) (Gossypium mexicanum).	-	-	34%
Blast2go	protein	-	-	53%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	53%
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	53%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	53%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	53%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P0CH30

Fln msg: your sequence is shorter than subject: 301 - 338

Fln protein: MEAVVGSEYWCHICKETIRNVIGEEVCCPRCNEGFVEEIEGERTQEAQSRSGGSESTPRERIFTELSEEAAREPQGRRPAMFVVERSPILHFLQPPILHFLQPLGGTVARNRVSGGTERVLVMNPFAVQHEEDEEGGFFVPIPEAFGDYFMGPGLDWLIQRLAENDANHYGTPPASRSAVEAMPAVKISEEHLSSDVSQCAVCLEEFEVGSEARQMPCKHMFHSDCIQPWLKLHSSCPVCRYQMPVDDEDDDAEKRQAEEANSSEENRGEANSSENRRDGSDRQANTSDSEGGENGQAGK*

Protein Length: 302

Fln nts: CGTCGTGACCTTGGCTGTCATGGGGAATCACATTAGAGACCCGTGAATTCATCTCCTCTGCTAGTGAATTTCTTTTTTTGTACTCTCCAGCTGCCGATTCGTGGCCAGATTTGAAGAAGAATTACAGAGCTTTTTCCTTTGCTGTGCTAGGATAAAGAGTTGCAGAGCATTTTCTTTCTTTTGCTAGGAATTTGAAA_-_ATGGAAGCCGTTGTGGGCTCTGAATACTGGTGCCACATATGCAAGGAAACAATTCGCAATGTAATTGGAGAAGAGGTCTGTTGCCCTAGATGCAATGAAGGGTTTGTTGAAGAAATCGAAGGTGAACGGACTCAAGAAGCTCAGTCCCGGTCTGGTGGCTCTGAGTCGACCCCAAGGGAAAGGATCTTTACCGAATTAAGTGAGGAAGCTGCTCGGGAGCCCCAGGGCAGGAGGCCTGCAATGTTTGTGGTTGAAAGGTCACCGATTCTTCACTTTCTGCAACCACCGATTCTTCACTTTCTGCAACCCCTGGGCGGTACTGTGGCCAGGAATCGAGTATCAGGAGGTACTGAAAGAGTTCTTGTAATGAACCCCTTTGCTGTCCAGCATGAAGAGGATGAGGAAGGGGGCTTTTTTGTGCCCATACCTGAGGCCTTCGGTGACTATTTCATGGGACCGGGGCTTGACTGGCTGATCCAACGCTTGGCAGAGAACGACGCGAACCATTACGGCACACCGCCGGCTTCGAGATCTGCCGTTGAGGCCATGCCTGCCGTGAAAATTTCCGAGGAGCACCTGAGCTCTGACGTGTCGCAATGTGCTGTTTGTTTGGAGGAGTTTGAAGTGGGAAGCGAGGCACGTCAGATGCCATGTAAGCATATGTTCCACTCCGATTGCATTCAGCCGTGGTTGAAGCTGCACAGCTCGTGCCCCGTGTGCCGGTACCAGATGCCGGTCGATGACGAGGATGATGACGCGGAGAAACGGCAAGCGGAGGAGGCCAATTCGTCAGAGGAGAACAGAGGGGAGGCCAATTCGTCAGAGAACAGAAGGGACGGGTCTGACAGACAGGCGAACACGTCAGATTCGGAGGGCGGAGAGAATGGCCAGGCTGGCAAGTGA___GATGAGAAGTGAATTTTCTCTGGCACTTCCCTGGCCACTTATCAGGTCCCTGTTTTTGTCGAGACGTGAAAGGGGTGGTGGGCAGAACGGGCAAGAAGGGGCTCCGGTTGGTGAGCCGTCTTTGGATTAGATATTTCGAGGCCTCAGTGTAAATAGTTTTCATCATAGAAATCTTTGATCTAGTTTTTGTGGACTGAACTTCTGCCCTGCATATATTTCGTAAGGGCTTATTACGTCTTTGAAATTCAACTGCCATGTTATTATTTTATTCTTTTTTGTGAAAGAATTATTCGCATGGTTTCCGACAATGTTATTGACTGCCATTATTTTATTTATCGGAAGTAATAATTTTCACAGGAATATAAAGGACAAATTACATGAGTTCAAG

Fln Alignment:

sp_v1.1_unigene15528___VVGSEYWCHICKETIRNVIG---EEVCCPRCNEGFVEEIEGERTQEAQS-RSGGSESTPRERIFTELSEEAAREPQGRRPAMFVVERSPILHFLQPPILHFLQPLGGTVARNRVS-GGTERVLVMNPFA------------------------VQHEEDEEGGFFVPIPEAFGDYFMGPGLDWLIQRLAENDANHYGTPPASRSAVEAMPAVKISEEHLSSDVSQCAVCLEEFEVGSEARQMPCKHMFHSDCIQPWLKLHSSCPVCRYQMPVDDEDDDAEKR--QAEEANSSEENRGEANSSENR
P0CH30_______________VTNKPFFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFLTLSDPFAS----------------LLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGRGDPFAFDPFTFIQNHLNDLRSSGAQIEFVIQNNPSDQG---FRLPANIGDYFIGPGLEQLIQQLAENDPNRYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLLPWLELHNSCPVCRHELPTDDPDYERRVRGAQGTSGGNDGDNSGQRSDGDNR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
654		75	25		0.996473
655		75	25		0.996473
1085		35	64		1.0
1232			25	75	1.0
1364	33			66	0.997452
1420			83	16	0.994512
1469	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain