SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15514

Length: 447 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene15514
CGTCGTGACCTTGGCTGTCACTGGTGGTGCTATCTTTGCGAAGAAATACAAGTCTCTCCATCCATTTCTGAAACCCTCTGTTGCCTGCCAAATATGAATAAAACAGTGCTGAAATTGTTGGCTATTGAGAGCGAGAAAAGCAAGAGAAGAGCTATGCAGACAATTGCAGGAATTGAAGGGGTAGAGTATATTGCTGTGGATAGGAAGGAAAAAAGGATAACTGTGATCGGGGAAGCAGATCCCGTCTGTCTAATAACGCAACTCAGGAAATTCTTCTGCACGGACCTCATAAGCGTTGGCCCTGCCAAAGAAGAAAAAACGGTGTGGGCGTAACGCTGTATTTTTCCAAGGTCAGAATAGTAGTAGCAAGTTCAGGGTTCTGGCTTTGATCTGACCAGGGTTCATGTGAAGCTGCCTTACGGGCTTGGAGAATAGGGAATTAGAATG

Ace file of the UniGene sp_v1.1_unigene15514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	metal ion binding protein, putative	-	-	1.0e-13	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%
Blast2go	metal ion binding	-	-	1.1123e-20	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	metal ion transport	GO:0030001	Biological Process	1.1123e-20	76%
Blast2go	metal ion binding	GO:0046872	Molecular Function	1.1123e-20	76%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYV0

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 47 aas, putative chimeric sequence, your sequence is shorter than subject: 80 - 129

Fln protein: MNKTVLKLLAIESEKSKRRAMQTIAGIEGVEYIAVDRKEKRITVIGEADPVCLITQLRKFFCTDLISVGPAKEEKTVWA*

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTGGTGGTGCTATCTTTGCGAAGAAATACAAGTCTCTCCATCCATTTCTGAAACCCTCTGTTGCCTGCCAAAT_-_ATGAATAAAACAGTGCTGAAATTGTTGGCTATTGAGAGCGAGAAAAGCAAGAGAAGAGCTATGCAGACAATTGCAGGAATTGAAGGGGTAGAGTATATTGCTGTGGATAGGAAGGAAAAAAGGATAACTGTGATCGGGGAAGCAGATCCCGTCTGTCTAATAACGCAACTCAGGAAATTCTTCTGCACGGACCTCATAAGCGTTGGCCCTGCCAAAGAAGAAAAAACGGTGTGGGCGTAA___CGCTGTATTTTTCCAAGGTCAGAATAGTAGTAGCAAGTTCAGGGTTCTGGCTTTGATCTGACCAGGGTTCATGTGAAGCTGCCTTACGGGCTTGGAGAATAGGGAATTAGAATG

Fln Alignment:

sp_v1.1_unigene15514___LPNMNKTVLKLLAIESEKSKRRAMQTIAGIEGVEYIAVDRKEKRITVIGEADPVCLITQLRKFFCTDLISVGPAKEEK
A9NYV0_______________MSNMKKMVLRV-SIEDEKSKRRAMRTVAAVEGVESVAVDMKDRKITVIGDADPVCLTVKLRKFGFTELLSVGPAKEEK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain