SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15501

Length: 1317 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15501

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger protein, putative	-	-	8.0e-33	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	zinc finger (an1-like) family protein	-	-	1.15307e-39	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	1.15307e-39	58%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.15307e-39	58%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, AN1-type	IPR000058	-	1.15307e-39	58%
Blast2go	Zinc finger, A20-type	IPR002653	-	1.15307e-39	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRP0

Fln msg: Separated hits, possible frame ERROR between 575 and 787, your sequence is longer than subject: 216 - 143

Fln protein: MASQESSKMQEEGSGRQVPEGPIHCLNNCGFFGSAATMNLCSKCYRELNAKPPSFSSHLKPQQPTLEQPNAKHPSIPLPSASLPSSSDVRMVEAVAAVETxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAASPFSRPIPS*KPLKSIRFETFLNPLLSFLLYYYYRENPWWP*

Protein Length: 217

Fln nts: ATGGGGACCGACCAAGCAAAGAAAGCCGTCGTGACCTTGGCTGTCACTCAATTTCTAGCGGCAGGGGTTCCCCGTCTCCTCCGTCTGCTAGGCATTTCTCTGGGATTCTTCTTCTTCTGCTCGGGGTCTCTCTGGTGAAATCGTCCCCGCGGGAGGAGGGCTGAGGGCAGGGCTCGGCTCGGCTTGGTTCGGTTCGGCAGGAGTTATCTCAGGGTTTTTCTCTTGCTTTTCTACGCCTTCGGACTCGGGCTTACAGTTATAGCATCTGGAAA_-_ATGGCGTCACAGGAGAGCTCAAAAATGCAAGAGGAAGGGAGTGGGAGACAAGTGCCGGAAGGGCCCATTCACTGCTTGAACAACTGCGGCTTCTTCGGGAGCGCGGCCACCATGAACTTGTGCTCCAAGTGCTACAGAGAGCTTAACGCCAAACCACCTTCTTTTTCTTCTCACTTGAAACCTCAGCAACCGACGCTTGAGCAGCCGAATGCGAAGCACCCATCGATTCCGCTTCCCTCGGCGTCGCTGCCCTCAAGTAGCGACGTCCGGATGGTGGAAGCAGTAGCAGCAGTGGAGACGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGGCCGCCTCGCCATTCTCAAGGCCAATCCCGTCGTGAAAGCCCCTAAAATCGATAAGATTTGAGACTTTCTTAAATCCATTGCTTTCTTTCTTGCTGTACTATTACTATAGGGAGAATCCTTGGTGGCCGTAG___CAGCTACAATGCGTATATATATAAATCTATATTCAAGGGTGCTTTGTTCTTGAGCATAGTGTGTTGTCGTCGATGATCGAGTGCAGGAATATGATATGAATAATTTGACTGGGGTTTTTCAATGGATGCTCTGCTTCTCAACGGCCATGGATGTATTCTCCCTGTATTGGGGTCATAGTAGCGGCCTTAATACAAAACTCTTTTGGACTTTTAGTAGTCTATTGCCATAATGGCTGTTGTGTGCCTGGACTTTACTTATGGTGATGAAATCCTCTGTTTTAAGTTTGATGGGTTTTCACTCACCCTCATGGGATGATGTTTTATGCTGAAGGGTGTTATGAGACAGAATTATATATATATATATATATTGGCAGCAGTGGAGACGGCCATTGGCACCGC

Fln Alignment:

sp_v1.1_unigene15501___MASQESSKMQEEGSGRQVPEGPIHCLNNCGFFGSAATMNLCSKCYRELNAKPPSFSSHLKPQQPTLEQPNAKHXXXXXXXXXXXXXXDVRMVEAVAAVETAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAASPFSRPIPS*KPLKSIRFETFLNPLLSFLLYYYYRENPWWP
B8LRP0_______________MASQESSKMQEEGSGRQVPEGPIHCLNNCGFFGSAATMNFCSKCYREINAKQPSFSSHLKPQQPALEQLNAKHPSMPLSAPPLPLSGDVPMVEAVAAVETAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAASPFSRPIPSSKPLKSIRFETLLNPLLSFLLYYYYRENPWWP

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
92			90	10	0.90298
96	10			90	0.90298
292	9	90			0.999872
434	2		5	76	1.0
435		5	2	92	0.991359
436	4			95	0.997749
437		5	7	87	0.999997
438	2		5	92	0.992495
440	2		5	87	0.935562
441	10		2	87	1.0
442		87	12		1.0
444		90	10		1.0
447	5		5	89	0.97549
448			5	94	0.9982
450	95	5			0.997984
451	90	10			1.0
453		92	5		0.992495
454		94	5		0.9982
455		5		94	0.9982
505			20	80	0.996423
506	20			80	0.996423
507	20	80			0.996423
508		80		20	0.996423
509	20	80			0.996423
511		80	20		0.996423
512	20		80		0.996423
513			80	20	0.996423
514	16	83			0.995451
515			83	16	0.995451
516			16	83	0.995451
517	16	83			0.995451
544			7	92	0.999602
601		96	3		0.983282
605	97		2		0.97849
1033		1		93	1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
106	118	TTC TTC TTC TTC T	13
1268	1286	TA TA TA TA TA TA TA TA TA T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain