SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15496

Length: 1181 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene15496

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin carrier protein n=3 Tax=Picea sitchensis RepID=A9NT18_PICSI	-	-	86%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Blast2go	protein	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	93%

Source	GOs	Term	Type	Identity
Blast2go	protein ubiquitination	GO:0016567	Biological Process	93%
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	93%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ81

Fln msg:

Fln protein: MSSPSKRREMDVMKLMMGDYKVEMINDGMNEFYVEFNGPRDSPYQGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPTDPLNGEAAALMMRDRQVYEQKVKEYCARYAKPEDIGKQEEEESSDEEVSEDEYESSDEEVAGHADP*

Protein Length: 185

Fln nts: CGTCGTGACCTTGGCTGTTACTATGGGGAGATATATTTCATTCTGGGCTACCTTGCGTCCATTCGTTTTTTTCGCTGGGAAGCCCTCTGCAAATACCCGAGGAATCCTGTAAAGTCTTTTGAGTCTTGTCAAATAATTTTCTGCGTTTCGTGGACCAGAAGAACGCCTCTGTCCTGTTAACTATGGAGGGCTATATATGCTGATATTGGATGGAGATATAATTGGTGTTTTGGGCTCTGGGTACAGGCTGTAAGGGCTCTCTGTCGAAGTTTTGTTGCAGTAAATTTAATACAATC_-_ATGTCTTCTCCCAGCAAGCGACGAGAAATGGATGTTATGAAACTCATGATGGGTGACTACAAAGTGGAAATGATAAACGATGGGATGAATGAATTTTATGTCGAATTCAACGGGCCTCGGGACAGCCCTTATCAGGGAGGAGTTTGGAAGATTCGTGTGGAGTTACCTGATGCCTATCCATACAAATCTCCTTCAATAGGTTTCGTCAATAAGATCTTTCATCCCAATGTTGATGAGATGTCTGGTTCAGTTTGTCTGGATGTAATTAATCAGACTTGGAGTCCCATGTTTGATCTGGTGAATGTATTTGAAGTGTTTCTTCCTCAACTTTTGTTGTATCCAAATCCAACGGATCCTTTAAATGGAGAGGCTGCAGCTTTAATGATGCGTGATAGGCAGGTCTATGAGCAGAAAGTAAAAGAATACTGTGCAAGATATGCTAAGCCGGAGGATATTGGAAAACAAGAAGAAGAAGAAAGCAGTGATGAAGAAGTTAGCGAAGATGAATATGAATCTAGTGATGAAGAAGTGGCTGGCCATGCCGACCCATGA___TTACTTGATTCGAGTGCATTGCATTTTCTTTGGAATTTCTCGATGGATTAAAAGATACAGATGCAACATACATAGCCTATTGAATTATTTGGAATTGTGGGATGGGGGCACATTTGGGGTGGGTATGAATGAATGGATTAATCTGCTGCACATATGGATGTTCAGTTGTACATATGAAAACTTGTAAAGCATTGTAATATCTCTTGTTTAAATTGAAACAAATCTCTCCTATTTGGCAGGATTCTGTACTGTAACTGTGAATTATTATGGATTCTCCTTGCATTCATTTCTGACATGGCTAATACTGTGTGGACTGAATGaGACTGCCAGCTA

Fln Alignment:

sp_v1.1_unigene15496___MSSPSKRREMDVMKLMMGDYKVEMINDGMNEFYVEFNGPRDSPYQGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPTDPLNGEAAALMMRDRQVYEQKVKEYCARYAKPEDIGKQXXXXXXXXXXXXXXXXXXXXXVAGHADP
C0PQ81_______________MSSPSKRREMDVMKLMMGDYKVEMINDGMNEFYVEFNGPRDSPYQGGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPTDPLNGEAAALMMRDRQVYEQKVKEYCARYAKPEDVGKQEEEESSDEEVSEDEYGSSDEEVAGHADP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
167		50		50	1.0
212	25		75		0.996473
220	80		20		0.995493
221	80		20		0.995493
222			20	80	0.995493
223			20	80	0.995493
425			9	90	1.0
440		7		92	0.999532
538	10	89			0.999919
539	10			89	0.999919
844	33	66			1.0
848		33	66		0.997452
919	88		11		0.923564
920		88	11		0.923564
939	22			77	0.999999

SSRs (tot: 1)

Start position	End position	Sequence	Length
760	773	AAG AAG AAG AAG AA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain