SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene15490

Length: 1005 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene15490 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein involved in vacuolar protein sorting (ISS) [Ostreococcus tauri] emb\|CAL51668.1\| Protein involved in vacuolar protein sorting (ISS) [Ostreococcus tauri]	-	-	6.0e-39	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	snf7 family protein	-	-	0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein transport	GO:0015031	Biological Process	0.0	89%
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	0.0	89%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LND7

Fln msg: atg_distance in limit (1-15): atg_distance = 1, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 207 - 235

Fln protein: HADEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAAMKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEEDLMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELSLPSAPSGHATVPQANPQITDEFGLPNIPKASLRS*

Protein Length: 208

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAAGGACCAGGAGCCTCCTCCAGACGATCAAGATACAACTGAAAAGATCAAAAAAAGAGGTGACACGCTGATGAAAAGGTTAAGAAACTCGATATTGAGCTTGCTAGATATAAAGAACAAATAAAGAAGACTAGGCCAGGCCCTGCTCAAGAGGCTATCAAAGCTCGGGCTATGAGGATACTCAAGCAAAAGAGGATGTATGAGGGACAGAGGGAAATGATTTACAATCAAACATTCAATCTTGATCAGGTTTCCTTTGCCACTGAGGGCATCAAGGATGCTCAGAATACGATGGCAGCCATGAAATCTGCCAACAAGGAACTGAAAGGATCGCTTAAGACGATGAAGATTGAGGACATTGATAATATGCAGGATGAGATGATGGACTTAATGGACATAAGTACGGAAATCCAAGACTCACTTGGGAGAAGCTATAGTGTGCCTGATGACATTGATGAGGAAGATCTAATGGGTGAGCTAGATGCCCTGGAAGCTGACATGGGCTCAGAGACCCAAACTGATGGGGTGCCTGCTTATTTACAACCTGATAAGGAGTCTGATCTAGATTCCGAATTGAGCCTGCCTTCAGCACCTTCTGGTCACGCCACAGTTCCACAAGCCAATCCACAGATTACAGATGAGTTTGGGCTGCCAAATATTCCAAAGGCCTCGCTTCGTTCATGA___GCAAGCACATTTTCCAAACTACCAGTGTAGGATATATAGCTGGTCTGGTTAGCATATTTATTGTGGCTGTGCGGTATTAATGATGTCATTTTATATATTTTCCATCGAAGTCATTTATAGCTTTATCTCACATTGTCATATTGAGCTTTCAGAGTAGATATCTCGTTTGCCGGAGACAATATGATCTTTGGAGCGTATGCTATATTTTGTTGCTTCTATCATCTGTTTCTATTCAGAGCATCAGTGTTTGTTGTAATTCATATTTATGTTTTTCCCAGCTACTTGTATGATAGAAG

Fln Alignment:

sp_v1.1_unigene15490___DEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAAMKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEEDLMGELDALEADMGSETQTDGVPAYLQXXXXXXXXXXXXXXXXXSGHATVPQANPQITDEFGLPNIPKASLRS
B8LND7_______________DEKVKKLDIELARYKEQIKKTRPGPAQEAIKARAMRILKQKRMYEGQREMIYNQTFNLDQVSFATEGIKDAQNTMAALKSANKELKGSLKTMKIEDIDNMQDEMMDLMDISTEIQDSLGRSYSVPDDIDEDELMGELDALEADMGSETQTDGVPAYLQPDKESDLDSELNLPSAPSGRATVPQANQQTTDEFGLPTVPRASLRT

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
483	20		80		0.999996
544		85		14	0.993533
581		11		88	0.923564
582		11		88	0.923564
631	85	14			0.993533
632		14		85	0.993533
634	14			85	0.993533
723	70		30		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain